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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttgcttgcttggttcctttctagattgcttgcttgctttgtctgttgtttgatatttatcctctgataagagcacgaacgaactctcgcttgctgattactgctgatttattactggaattggttggtagGTAGCACACTATGCAGTGCAGGAGCTAACAGCAGACCCAACGCCAACGGCAGCCGATTCTTCATCACCTACGCCAAGCAGCCGTTCTGAAAAAAAATTGA

Basic information

species Zea mays
transcript GRMZM2G165926_T01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71439181|gb|DR820231.1|DR820231
EST:     GGGCCTCCATCTGGGCACCAAGTTCGCCGACGAGTTCAGGGAGTCCCAAG                         GTAGCACACTATGCAGTGCAGGAGCTAACAGCAGACCCAACGCCAACGGCA
genomic: GGGCCTCCATCTGGGCACCAAGTTCGCCGACGAGTTCAGGGAGTCCCAAGgttggttgct ... tggttggtagGTAGCACACTATGCAGTGCAGGAGCTAACAGCAGACCCAACGCCAACGGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaacgaactctcgcttgctgattactgctgatttattactggaattggttggtagGTAGCACACTATGCAGTGCAGGAGCTAACAGCAGACCCAACGCCAACGGCAGCCGATTCTTCATCACCTACGCCAAGCAGCCGTTCTGAAAAAAAATTGA
                         tgctgat  putative branch site (score: 3)
                            tgatttatta  TA-rich tract