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gtttgtacatcagcaaatttaactgttgtgtgaaaaaaatgttatgtatccattcatttttttgttttcgtttttaccatttgatttaatgcaattagATGTTGGAGAGTCAATTGGCCGAAGAAGAATGATACAGATACTTGCAAAGATGCAAATGAG
species | Zea mays |
transcript | GRMZM2G164835_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CCAGGTCAGGCTCTGGCTGAGGAACTTGCTCGTCGGCTTGGTAAAGAAAG ATGTTGGAGAGTCAATTGGCCEST: gi|160481633|gb|EY254465.1|EY254465
genomic: CCAGGTCAGGCTCTGGCTGAGGAACTTGCTCGTCGGCTTGGTAAAGAAAGgtttgtacat ... atgcaattagATGTTGGAGAGTCAATTGGCC
EST: CCAGGTCAGGCTCTGGCTGAGGAACTTGCTCGTCGGCTTGGTAAAGAAAG ATGTTGGAGAGTCAATTGGCCGAAGAAGAATGATACAGATACTTGCAAAGA
genomic: CCAGGTCAGGCTCTGGCTGAGGAACTTGCTCGTCGGCTTGGTAAAGAAAGgtttgtacat ... atgcaattagATGTTGGAGAGTCAATTGGCCGAAGAAGAATGATACAGATACTTGCAAAGA
atgtatccattcatttttttgttttcgtttttaccatttgatttaatgcaattagATGTTGGAGAGTCAATTGGCCGAAGAAGAATGATACAGATACTTGCAAAGATGCAAATGAG
atttaat putative branch site (score: 19)
atttttttgttttcgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtacatcagcaaatttaactgttgtgtgaaaaaaatgttatgtatccattcatttttttgttttcgtttttaccatttgatttaatgcaattagATGTTGGAGAGTCAATTGGCCGAAGAAGAATGATACAGATACTTGCAAAGATGCAAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG