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gtctgtactaactattccctccatatatatttatatttcttcgtccttatctttatttgttcccgtactatagGTTGGACAGAAACGTGGAAGATTGCATGCAAATCTAGAAGATGAACAACCTAAAAAGAAGGTTAGATTAGGGAGCCCAGCGGCTCAATGGATTTCAGTTT
species | Zea mays |
transcript | GRMZM2G164265_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGATTGAAGCACCTGCGTCGAGACCAGTCAGAATTGATGGGGCCCTCAAG GTTGGACAGAAACGTGGAAGATTGCATGCAAATCTAGAAGATGAACAACCTEST: gi|149031683|gb|EE154868.2|EE154868
genomic: TGATTGAAGCACCTGCGTCGAGACCAGTCAGAATTGATGGGGCCCTCAAGgtctgtacta ... cgtactatagGTTGGACAGAAACGTGGAAGATTGCATGCAAATCTAGAAGATGAACAACCT
EST: GAAGCACCTGCGTCGAGACCAGTCAGAA-TGATGGGGGCCCTCAAG GTTGGACAGAAACGTGGAAGATTGCATGCAAATCTAGAAGATGACCAACCTEST: gi|211391059|gb|FL093738.1|FL093738
genomic: GAAGCACCTGCGTCGAGACCAGTCAGAATTGAT-GGGGCCCTCAAGgtctgtacta ... cgtactatagGTTGGACAGAAACGTGGAAGATTGCATGCAAATCTAGAAGATGAACAACCT
EST: TGATTGAAGCACCTGCGTCGAGACCAGTCAGAATTGATGGGGCCCTCAAG GTTGGACAGAAACGTGGAAGATTGCATGCAAATCTAGAAGATGAACAACCTEST: gi|71300241|gb|DR786191.1|DR786191
genomic: TGATTGAAGCACCTGCGTCGAGACCAGTCAGAATTGATGGGGCCCTCAAGgtctgtacta ... cgtactatagGTTGGACAGAAACGTGGAAGATTGCATGCAAATCTAGAAGATGAACAACCT
EST: TGATTGAAGCACCTGCGTCGAGACCAGTCAGAATTGATGGGGCCCTCAAG GTTGGACAGAAACGTGGAAGATTGCATGCAAATCTAGAAGATGAACAACCTEST: gi|148950556|gb|EC896133.2|EC896133
genomic: TGATTGAAGCACCTGCGTCGAGACCAGTCAGAATTGATGGGGCCCTCAAGgtctgtacta ... cgtactatagGTTGGACAGAAACGTGGAAGATTGCATGCAAATCTAGAAGATGAACAACCT
EST: TGATTGAAGCACCTGGGTCGAGACCAGTCAGAATTGATGGGGCCCTCAAG GTTGGACAGAAACGTGGAAGATTGCATGCAAATCTAGAAGATGAACAACCTEST: gi|37423723|gb|CF649590.1|CF649590
genomic: TGATTGAAGCACCTGCGTCGAGACCAGTCAGAATTGATGGGGCCCTCAAGgtctgtacta ... cgtactatagGTTGGACAGAAACGTGGAAGATTGCATGCAAATCTAGAAGATGAACAACCT
EST: TGATTGAAGCACCTGCGTCGAGACCAGTCAGAATTGATGGGGCCCTCAAG GTTGGACAGAAACGGTGGAAGATTGCATGCAAATCTAGAAGATGAACAACCEST: gi|32913238|gb|CF018050.1|CF018050
genomic: TGATTGAAGCACCTGCGTCGAGACCAGTCAGAATTGATGGGGCCCTCAAGgtctgtacta ... cgtactatagGTTGGACAGAAAC-GTGGAAGATTGCATGCAAATCTAGAAGATGAACAACC
EST: TGATTGAAGCACCTGCGTCGAGACCAGTCAGAATTGATGGGGCCCTCAAG GTTGGACAGAAACGTGGAAGATTGCATGCAAATCTAGAAGATGAACAACCTEST: gi|71430775|gb|DR811825.1|DR811825
genomic: TGATTGAAGCACCTGCGTCGAGACCAGTCAGAATTGATGGGGCCCTCAAGgtctgtacta ... cgtactatagGTTGGACAGAAACGTGGAAGATTGCATGCAAATCTAGAAGATGAACAACCT
EST: TGATTGAAGCACCTGCGTCGAGACCAGTCAGAATTGATGGGGCCCTCAAG GTTGGACAGAAACGTGGAAGATTGCATGCAAATCTAGAAGATGAACAACCTEST: gi|67043197|gb|CO469452.1|CO469452
genomic: TGATTGAAGCACCTGCGTCGAGACCAGTCAGAATTGATGGGGCCCTCAAGgtctgtacta ... cgtactatagGTTGGACAGAAACGTGGAAGATTGCATGCAAATCTAGAAGATGAACAACCT
EST: TGATTGAAGCACCTGCGTCGAGACCAGTCAGAATTGATGGGGCCCTCAAG GTTGGACAGAAACGTGGAAGATTGCATGCAAATCTAGAAGATGAACAACCT
genomic: TGATTGAAGCACCTGCGTCGAGACCAGTCAGAATTGATGGGGCCCTCAAGgtctgtacta ... cgtactatagGTTGGACAGAAACGTGGAAGATTGCATGCAAATCTAGAAGATGAACAACCT
ctccatatatatttatatttcttcgtccttatctttatttgttcccgtactatagGTTGGACAGAAACGTGGAAGATTGCATGCAAATCTAGAAGATGAACAACCTAAAAAGAAGGTTAGATTAGGGAGCCCAGCGGCTCAATGGATTTCAGTTT
tttcttcgtccttatc CT-rich tract
tatatatttatatttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtactaactattccctccatatatatttatatttcttcgtccttatctttatttgttcccgtactatagGTTGGACAGAAACGTGGAAGATTGCATGCAAATCTAGAAGATGAACAACCTAAAAAGAAGGTTAGATTAGGGAGCCCAGCGGCTCAATGGATTTCAGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG