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gtagtctgatattcttgttcagttgtaatacggcttggcctcattgacaggaactgactagctatttgtcatcttcagCAACATTTTCCGTGTGTTTGGTTGTGGTACTGGTAACAGTGAGGCGACAACACTTGAAGCAACCCGAAACCCTACAAG
species | Zea mays |
transcript | GRMZM2G164185_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAGTGTTGTCAAAGTGGTGATGGATTAAGAGTAGCAACTGGTTCCTACAG CAACATTTTCCGTGTGTTTGGTTGTGGTACTGGTAACAGTGAGGCGACAACEST: gi|67032341|gb|CO461090.1|CO461090
genomic: GAGTGTTGTCAAAGTGGTGATGGATTAAGAGTAGCAACTGGTTCCTACAGgtagtctgat ... tcatcttcagCAACATTTTCCGTGTGTTTGGTTGTGGTACTGGTAACAGTGAGGCGACAAC
EST: GAGTGTTGTCAAAGTGGTGATGGATTAAGAGTAGCAACTGGTTCCTACAG CAACATTTTCCCGTGTGTTTGGTTGCGGTACTGGTAACAGTGAGGCGACAAEST: gi|71425474|gb|DR806698.1|DR806698
genomic: GAGTGTTGTCAAAGTGGTGATGGATTAAGAGTAGCAACTGGTTCCTACAGgtagtctgat ... tcatcttcagCAACATTTTCC-GTGTGTTTGGTTGTGGTACTGGTAACAGTGAGGCGACAA
EST: GAGTGTTGTCAAAGTGGTGATGGATTAAGAGTAGCAACTGGTTCCTACAG CAACATTTTCCGTGTGTTTGGTTGTGGTACTGGTAACAGTGAGGCGACAACEST: gi|113686848|gb|DW842058.1|DW842058
genomic: GAGTGTTGTCAAAGTGGTGATGGATTAAGAGTAGCAACTGGTTCCTACAGgtagtctgat ... tcatcttcagCAACATTTTCCGTGTGTTTGGTTGTGGTACTGGTAACAGTGAGGCGACAAC
EST: ATTAAGAGTAGCAACTGGTTCCTACAG CAACATTTTCCGTGTGTTTGGTTGTGGTACTGGTAACAGTGAGGCGACAAC
genomic: ATTAAGAGTAGCAACTGGTTCCTACAGgtagtctgat ... tcatcttcagCAACATTTTCCGTGTGTTTGGTTGTGGTACTGGTAACAGTGAGGCGACAAC
tgtaatacggcttggcctcattgacaggaactgactagctatttgtcatcttcagCAACATTTTCCGTGTGTTTGGTTGTGGTACTGGTAACAGTGAGGCGACAACACTTGAAGCAACCCGAAACCCTACAAG
aactgac putative branch site (score: 2)
tcatcttc putative PPT
tatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtctgatattcttgttcagttgtaatacggcttggcctcattgacaggaactgactagctatttgtcatcttcagCAACATTTTCCGTGTGTTTGGTTGTGGTACTGGTAACAGTGAGGCGACAACACTTGAAGCAACCCGAAACCCTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA