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gtttgcctcaaaacttctcgtgcaccttcaagaactattaagttgccatctgcaagcactgagctcaaacttggaacctaatggcagGGCCATCTAGTTGATCTCGTTCAGAGGGAAGTAAAAGCGCTTTTACAGACGGCACTGGAAGTAGCTCTTTCAGTTATTCGTGCTAATCCTGCAGTTTTGG
species | Zea mays |
transcript | GRMZM2G163193_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGACTCTGGTGTTTCTCCATGGGNGAAGAGATCAG GGCCATCTAGTTGATCTCGTTCAGAGGGAAGTAATAGCGCTTTTACAGACGEST: gi|78121515|gb|DV539899.1|DV539899
genomic: TGACTCTGGTGGTTCTCCATGGG-GAAGAGATCAGgtttgcctca ... ctaatggcagGGCCATCTAGTTGATCTCGTTCAGAGGGAAGTAAAAGCGCTTTTACAGACG
EST: CAAATGGTGGGTTAGATGACTCTGGTGGTTCTCCATGGGGAAGAGATCAG GGCCATCTAGTTGATCTCGTTCAGAGGGAAGTAAAAGCGCTTTTACAGACGEST: gi|71449715|gb|DR830765.1|DR830765
genomic: CAAATGGTGGGTTAGATGACTCTGGTGGTTCTCCATGGGGAAGAGATCAGgtttgcctca ... ctaatggcagGGCCATCTAGTTGATCTCGTTCAGAGGGAAGTAAAAGCGCTTTTACAGACG
EST: CAAATGGTGGGTTAGATGACTCTGGTGGTTCTCCATGGGGAAGAGATCAG GGCCATCTAGTTGATCTCGTTCAGAGGGAAGTAAAAGCGCTTTTACAGACGEST: gi|67033989|gb|CO462738.1|CO462738
genomic: CAAATGGTGGGTTAGATGACTCTGGTGGTTCTCCATGGGGAAGAGATCAGgtttgcctca ... ctaatggcagGGCCATCTAGTTGATCTCGTTCAGAGGGAAGTAAAAGCGCTTTTACAGACG
EST: CAAATGGTGGGTTAGATGACTCTGGTGGTTCTCCATGGGGAAGAGATCAG GGCCATCTAGTTGATCTCGTTCAGAGGGAAGTAAAAGCGCTTTTACAGACGEST: gi|166505071|gb|EG317739.1|EG317739
genomic: CAAATGGTGGGTTAGATGACTCTGGTGGTTCTCCATGGGGAAGAGATCAGgtttgcctca ... ctaatggcagGGCCATCTAGTTGATCTCGTTCAGAGGGAAGTAAAAGCGCTTTTACAGACG
EST: TCTGGTGGTTCTCCATGGGGAAGAGATCAG GGCCATCTAGTTGATCTCGTTCAGAGGGAAGTAAAAGCGCTTTTACTTAGAEST: gi|71329683|gb|DR801566.1|DR801566
genomic: TCTGGTGGTTCTCCATGGGGAAGAGATCAGgtttgcctca ... ctaatggcagGGCCATCTAGTTGATCTCGTTCAGAGGGAAGTAAAAGCGCTTTTAC--AGA
EST: CAAATGGTGGGTTAGATGACTCTGGTGGTTCTCCATGGGGAAGAGATCAG GGCCATCTAGTTGATCTCGTTCAGAGGGAAGTAAAAGCGCTTTTACAGACGEST: gi|13558170|gb|BG549526.1|BG549526
genomic: CAAATGGTGGGTTAGATGACTCTGGTGGTTCTCCATGGGGAAGAGATCAGgtttgcctca ... ctaatggcagGGCCATCTAGTTGATCTCGTTCAGAGGGAAGTAAAAGCGCTTTTACAGACG
EST: TGGTTCTCCATGGGGAAGAGATCAG GGCCATCTAGTTGATCTCGTTCAGAGGGAAGTAAAAGCGCTTTTACAGACGEST: gi|211228739|gb|FL103757.1|FL103757
genomic: TGGTTCTCCATGGGGAAGAGATCAGgtttgcctca ... ctaatggcagGGCCATCTAGTTGATCTCGTTCAGAGGGAAGTAAAAGCGCTTTTACAGACG
EST: CAAATGGTGGGTTAGATGACTCTGGTGGCTCTCCATGGGGAAGAGATCAG GGCCATCTAGTTGATCTCGTTCAGAGGGAAGTAAAAGCGCTTTTACAGACGEST: gi|13558169|gb|BG549525.1|BG549525
genomic: CAAATGGTGGGTTAGATGACTCTGGTGGTTCTCCATGGGGAAGAGATCAGgtttgcctca ... ctaatggcagGGCCATCTAGTTGATCTCGTTCAGAGGGAAGTAAAAGCGCTTTTACAGACG
EST: GTGGTTCTCCATGGGGAAGAGATCAG GGCCATCTAGTTGATCTCGTTCAGAGGGAAGTAAAAGCGCTTTTACAGACGEST: gi|101384111|gb|EB814110.1|EB814110
genomic: GTGGTTCTCCATGGGGAAGAGATCAGgtttgcctca ... ctaatggcagGGCCATCTAGTTGATCTCGTTCAGAGGGAAGTAAAAGCGCTTTTACAGACG
EST: CCATGGGGAAGAGATCAG GGCCATCTAGTTGATCTCGTTCAGAGGGAAGTAAAAGCGCTTTTACAGACG
genomic: CCATGGGGAAGAGATCAGgtttgcctca ... ctaatggcagGGCCATCTAGTTGATCTCGTTCAGAGGGAAGTAAAAGCGCTTTTACAGACG
aactattaagttgccatctgcaagcactgagctcaaacttggaacctaatggcagGGCCATCTAGTTGATCTCGTTCAGAGGGAAGTAAAAGCGCTTTTACAGACGGCACTGGAAGTAGCTCTTTCAGTTATTCGTGCTAATCCTGCAGTTTTGG
acctaat putative branch site (score: 188)
ttaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcctcaaaacttctcgtgcaccttcaagaactattaagttgccatctgcaagcactgagctcaaacttggaacctaatggcagGGCCATCTAGTTGATCTCGTTCAGAGGGAAGTAAAAGCGCTTTTACAGACGGCACTGGAAGTAGCTCTTTCAGTTATTCGTGCTAATCCTGCAGTTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG