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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagtgcaggtagcattgttgtaatcctctcagattgaaagctactcatttcagtcgttcaggtcagcagtccttatagaattgaactgtctattttgcagGTGATATTCACAGAAGAAAATAGATCCCTACTCCACTACCTGACAAACCTTTGTGCTATAGTGGGAG

Basic information

species Zea mays
transcript GRMZM2G161019_T01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G161019_T03 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os05g41120.1 (Oryza sativa), 3'ss of exon 11
tagtgcaggtagcattgttgtaatcctctcagattgaaagctactc-------atttcagtcgttcaggtcagcagtccttatagaattgaactgtcta--------ttttgcagGTGATATTCACAGAAGAAAATAGATCCCTACTCCACTACCTGACAAACCTTTGTGCTATAGTGGGAG
               |  | |  || | |||||||||||| |||||        ||| |    || || || |    ||    | |  | |  | || |        |||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| ||||| ||||||||||||||||
---------------tcatattctcttatcagattgaaaggtactccttttaagttttaactctttagttctgtgacccactaaaatcttagttctccaccttatgtttttgcagGTAATATTTACAGAAGAAAATAGTTCCCTGCTCCACTATCTGACGAACCTATGTGCTATAGTGGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94476603|gb|EB705561.1|EB705561
EST:     GAAATCCCCAACCTGGAGTATTTTTCTTCTATGATTTCTCACCTATAAAG                         GTGATATTCACAGAAGAAAATAGATTCCCCTACTCCACTACCTGACAAACC
genomic: GAAATCCC-AACCTGGAGTATTTTTCTTCTATGATTTCTCACCTATAAAGgtaacagagt ... tattttgcagGTGATATTCACAGAAGAAAATAGAT-CCC-TACTCCACTACCTGACAAACC
EST: gi|30088122|gb|CB886327.1|CB886327
EST:     CGAAATCCCAACCTGGAGTATTTTTCTTCTATGATTTCTCACCTATAAAG                         GTGATATTCACAGAAGAAAATAGATCCCTACTCCACTACCTGACAAACCTT
genomic: CGAAATCCCAACCTGGAGTATTTTTCTTCTATGATTTCTCACCTATAAAGgtaacagagt ... tattttgcagGTGATATTCACAGAAGAAAATAGATCCCTACTCCACTACCTGACAAACCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttcagtcgttcaggtcagcagtccttatagaattgaactgtctattttgcagGTGATATTCACAGAAGAAAATAGATCCCTACTCCACTACCTGACAAACCTTTGTGCTATAGTGGGAG
                                           tctatttt  CT-rich tract
                           ttatagaatt  TA-rich tract