1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacatgcatggatggacaaaacatttcatacacccatttatcatctttatttatgaatttcttggaaaaaatatatatttttccgccaaaagcccaaccggatcgtacttttcattcagGTTACCGAAACCTAAACGCGGAGGTGGAAGAAGGCATATGCCAGGTCATGTCTTACTTGTGGCTGGAATCAGAGATTCTTCCGTCATCCTCGAGGCACGC
species | Zea mays |
transcript | GRMZM2G160198_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGGTTCCATCCTCGCCCATGAGCTGATGCACGGGTGGCTGCGTCTCAAAG GTTACCGAAACCTAAACGCGGAGGTGGAAGAAGGCATATGCCAGGTCATGTEST: gi|211391824|gb|FL466840.1|FL466840
genomic: AGGTTCCATCCTCGCCCATGAGCTGATGCACGGGTGGCTGCGCCTCAAAGgtacatgcat ... tttcattcagGTTACCGAAACCTAAACGCGGAGGTGGAAGAAGGCATATGCCAGGTCATGT
EST: AGGTTCCATCCTCGCCCATGAGCTGATGCACGGGTGGCTGCGCCTCAAAG GTTACCGAAACCTAAACGCGGAGGTGGAAGAAGGCATATGCCAGGTCATGTEST: gi|148971753|gb|EE022486.2|EE022486
genomic: AGGTTCCATCCTCGCCCATGAGCTGATGCACGGGTGGCTGCGCCTCAAAGgtacatgcat ... tttcattcagGTTACCGAAACCTAAACGCGGAGGTGGAAGAAGGCATATGCCAGGTCATGT
EST: AGGTTCCATCCTCGCCCATGAGCTGATGCACGGGTGGCTGCGCCTCAAAG GTTACCGAAACCTAAACGCGGAGGTGGAAGAAGGCATATGCCAGGTCATGT
genomic: AGGTTCCATCCTCGCCCATGAGCTGATGCACGGGTGGCTGCGCCTCAAAGgtacatgcat ... tttcattcagGTTACCGAAACCTAAACGCGGAGGTGGAAGAAGGCATATGCCAGGTCATGT
gaaaaaatatatatttttccgccaaaagcccaaccggatcgtacttttcattcagGTTACCGAAACCTAAACGCGGAGGTGGAAGAAGGCATATGCCAGGTCATGTCTTACTTGTGGCTGGAATCAGAGATTCTTCCGTCATCCTCGAGGCACGC
cttttcattc CT-rich tract
aatatatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatgcatggatggacaaaacatttcatacacccatttatcatctttatttatgaatttcttggaaaaaatatatatttttccgccaaaagcccaaccggatcgtacttttcattcagGTTACCGAAACCTAAACGCGGAGGTGGAAGAAGGCATATGCCAGGTCATGTCTTACTTGTGGCTGGAATCAGAGATTCTTCCGTCATCCTCGAGGCACGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA