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...tcctctaggaaatgcagtttactatggtggacagtctgcatacctttctgcctttttcctgaaactcccaactaatatatccgggtgttaataataccagGTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGACATACTGAAAGAGTTCGCTGCTCAACAAGACGACGACCTGTAGAATACAG
species | Zea mays |
transcript | GRMZM2G158097_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAG GTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGACEST: gi|71766886|gb|DR964823.1|DR964823
genomic: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAGgtatttccat ... ataataccagGTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGAC
EST: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAG GTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGACEST: gi|32841037|gb|CD980718.1|CD980718
genomic: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAGgtatttccat ... ataataccagGTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGAC
EST: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAG GTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGACEST: gi|32841492|gb|CD981173.1|CD981173
genomic: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAGgtatttccat ... ataataccagGTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGAC
EST: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAG GTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGACEST: gi|71766748|gb|DR964685.1|DR964685
genomic: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAGgtatttccat ... ataataccagGTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGAC
EST: CTGGTTTTGCGGCAGCTATTGGAAATTATTTTACTCATGAGACGGCTCAG GTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGCCCATACAAGGAAGACEST: gi|32841296|gb|CD980977.1|CD980977
genomic: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAGgtatttccat ... ataataccagGTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGAC
EST: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAG GTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGACEST: gi|50325271|gb|CO520397.1|CO520397
genomic: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAGgtatttccat ... ataataccagGTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGAC
EST: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAG GTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGCCCATCCAAGGAAGACEST: gi|89249944|gb|DY621730.1|DY621730
genomic: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAGgtatttccat ... ataataccagGTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGAC
EST: CTGGTTTTGCGGCAGCTATTGGAAATTATTTTACTCATGAGACGGCTCAG GTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGACEST: gi|32841681|gb|CD981362.1|CD981362
genomic: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAGgtatttccat ... ataataccagGTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGAC
EST: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAG GTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGACEST: gi|32841005|gb|CD980686.1|CD980686
genomic: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAGgtatttccat ... ataataccagGTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGAC
EST: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAG GTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGACEST: gi|32840850|gb|CD980531.1|CD980531
genomic: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAGgtatttccat ... ataataccagGTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGAC
EST: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAG GTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGACEST: gi|71766749|gb|DR964686.1|DR964686
genomic: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAGgtatttccat ... ataataccagGTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGAC
EST: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAG GTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGACEST: gi|32841261|gb|CD980942.1|CD980942
genomic: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAGgtatttccat ... ataataccagGTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGAC
EST: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAG GTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGACEST: gi|16379420|gb|BI992935.1|BI992935
genomic: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAGgtatttccat ... ataataccagGTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGAC
EST: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAG GTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGAC
genomic: CTGGTTTTGCGGCAGCTATTGGAAATTATCTTACTCATGAGACGGCTCAGgtatttccat ... ataataccagGTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGAC
ttctgcctttttcctgaaactcccaactaatatatccgggtgttaataataccagGTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGACATACTGAAAGAGTTCGCTGCTCAACAAGACGACGACCTGTAGAATACAG
aactaatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctctaggaaatgcagtttactatggtggacagtctgcatacctttctgcctttttcctgaaactcccaactaatatatccgggtgttaataataccagGTTAAGCATGCTATTAAGGTCCTTCGTGATTCCGGACCATACAAGGAAGACATACTGAAAGAGTTCGCTGCTCAACAAGACGACGACCTGTAGAATACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT