1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaatgtgaatggatgtcgcagtgcagatcacattaaagaatgatcttgaaacctgtggccttatctactgttacatctactgcagGCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGAGAGTACAAGAAACTGGCCGACGATGGTGAACCTCATCTACTGCTGGACG
species | Zea mays |
transcript | GRMZM2G157836_T03 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAG GCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGAEST: gi|71442271|gb|DR823321.1|DR823321
genomic: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAGgtaatgtgaa ... tctactgcagGCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGA
EST: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAG GCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGAEST: gi|71445495|gb|DR826545.1|DR826545
genomic: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAGgtaatgtgaa ... tctactgcagGCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGA
EST: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAG GCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGAEST: gi|78092058|gb|DV520432.1|DV520432
genomic: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAGgtaatgtgaa ... tctactgcagGCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGA
EST: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAG GCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGAEST: gi|30705123|gb|CD058666.1|CD058666
genomic: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAGgtaatgtgaa ... tctactgcagGCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGA
EST: ACACAGTCACCAATGTCTGATAAG GCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGAEST: gi|30705125|gb|CD058667.1|CD058667
genomic: ACACAGTCACCAATGTCTGATAAGgtaatgtgaa ... tctactgcagGCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGA
EST: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAG GCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGAEST: gi|71758127|gb|DR956064.1|DR956064
genomic: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAGgtaatgtgaa ... tctactgcagGCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGA
EST: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAG GCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGAEST: gi|78088795|gb|DV517188.1|DV517188
genomic: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAGgtaatgtgaa ... tctactgcagGCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGA
EST: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAG GCAGCAGCAAGCGTGAACGTACTTCCAGAGAGCGCGCGTATCACTTGCAGAEST: gi|50332337|gb|CO527463.1|CO527463
genomic: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAGgtaatgtgaa ... tctactgcagGCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGA
EST: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAG GCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGAEST: gi|148964307|gb|EE015497.2|EE015497
genomic: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAGgtaatgtgaa ... tctactgcagGCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGA
EST: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAG GCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGAEST: gi|71756834|gb|DR954771.1|DR954771
genomic: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAGgtaatgtgaa ... tctactgcagGCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGA
EST: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAG GCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGAEST: gi|18164079|gb|BM333918.1|BM333918
genomic: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAGgtaatgtgaa ... tctactgcagGCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGA
EST: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAG GCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGAEST: gi|67015106|gb|CO443855.1|CO443855
genomic: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAGgtaatgtgaa ... tctactgcagGCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGA
EST: TGACTATTTGAGCTTCACACAGTCACCAATGTCTGATAAG GCAGCACCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGAEST: gi|78087901|gb|DV516294.1|DV516294
genomic: TGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAGgtaatgtgaa ... tctactgcagGCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGA
EST: TTCAGAAGTTGGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAG GCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGAEST: gi|148945732|gb|EC891011.2|EC891011
genomic: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAGgtaatgtgaa ... tctactgcagGCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGA
EST: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAG GCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGAEST: gi|101400845|gb|EB822120.1|EB822120
genomic: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAGgtaatgtgaa ... tctactgcagGCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGA
EST: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAG GCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGA
genomic: TTCAGAAGTTTGACTATGAGAGCTTCACACAGTCACCAATGTCTGATAAGgtaatgtgaa ... tctactgcagGCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGA
cattaaagaatgatcttgaaacctgtggccttatctactgttacatctactgcagGCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGAGAGTACAAGAAACTGGCCGACGATGGTGAACCTCATCTACTGCTGGACG
ttatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgtgaatggatgtcgcagtgcagatcacattaaagaatgatcttgaaacctgtggccttatctactgttacatctactgcagGCAGCAGCAAGCGTGAACGTACTCCCAGAGAGCGCGCGTATCACTTGCAGAGAGTACAAGAAACTGGCCGACGATGGTGAACCTCATCTACTGCTGGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA