Sequence
atgc intronic sequence ATGC exonic sequence...taagctcatattctgatatcacctcaagttctcaagtacattcattatgttctcgcagcatatagattggattcataatgtcaatgttttgcatctgcagTGTATTACCTTCAGGGCTGTCGTGTCTTCAGAGAGACACACCCTGTTTTCTTGGCTCTCCACAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G155837_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os04g52630.1 (Oryza sativa), 3'ss of exon 13
-taagctcatattctgatatcacctcaagttctcaagtacattcattatgttctcgcagcatatagattggattcataatgtcaatgttttgcatctgcagTGTATTACCTTCAGGGCTGTCGTGTCTTCAGAGAGACACACCCTGTTTTCTTGGCTCTCCACAAT
| ||||||| || || |||| |||||| | | | ||||| |||| | || || ||| | ||||| ||||||| |||||| ||||| ||||||||||||||| ||| ||||||||| |||| ||||| |||||||| |||||||| |
gtgcatccatattcgaatttcttctcacaaactcaagcataaat-ccagattctctcagcttctaatttcgatcgaaaatgttgatgtttttcatctgtagTGTCTTACCTTCAGGGCTGGAGTGCCTTCAGAGAAACACGCCCTGCTTTCTTGGTTCTCCACATT
upper sequence: GRMZM2G155837_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os04g52600.1 (Oryza sativa), 3'ss of exon 15
-taagctcatattc-tgatatcacctcaagttctcaagtacattcattatgttctcgcagcatatagattggattcataatgtcaatgttttgcatctgcagTGTATTACCTTCAGGGCTGTCGTGTCTTCAGAGAGACACACCCTGTTTTCTTGGCTCTCCACAAT
| | || ||| | || || | |||||| |||||| | | | |||| |||||| ||| | || ||||||| || ||||| ||||||||||||||||| | |||||||||||||| | || ||||| ||| | || || ||||||||||| |||||||| |
gtgcgtccacatttgtaatttctcatcaagtactcaagcataattattaggttctccaagcttcta-attggatgcaaaatgttggtgttttgcatctgcagTATCTTACCTTCAGGGCTTGCATGCCTTCAAAGAAATACGCCATGTTTTCTTGGTTCTCCACAGT
upper sequence: GRMZM2G155837_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os04g52614.1 (Oryza sativa), 3'ss of exon 11
taagctcatatt-ctgatatcacctcaagttctcaagtacattcattatgttctcgcagcatatagattggattcataatgtcaatgttttgcatctgcagTGTATTACCTTCAGGGCTGTCGTGTCTTCAGAGAGACACACCCTGTTTTCTTGGCTCTCCACAAT
| || |||||| ||||| || | |||| |||||| | | | | || |||||| |||| | || ||| |||||| | ||| ||| | |||| ||||||| | ||||||||||||||| | || ||||||||| | ||| ||| |||||||| |||||||| |
tgcgcccatatttctgatttctcaacaagaactcaagcataattaataggttctctcagcttcta-atttgattcaaattgttgatgctctgcacctgcagTATCTTACCTTCAGGGCTGGCATGCCTTCAGAGAAATACATCCTTCTTTCTTGGTTCTCCACAGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatgttctcgcagcatatagattggattcataatgtcaatgttttgcatctgcagTGTATTACCTTCAGGGCTGTCGTGTCTTCAGAGAGACACACCCTGTTTTCTTGGCTCTCCACAAT
atatagatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taagctcatattctgatatcacctcaagttctcaagtacattcattatgttctcgcagcatatagattggattcataatgtcaatgttttgcatctgcagTGTATTACCTTCAGGGCTGTCGTGTCTTCAGAGAGACACACCCTGTTTTCTTGGCTCTCCACAAT
- - - - - ttctgat
- - - - - - - - - - - - - - - - - - -acattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - gcagcat