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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatttttttctttccttattcttgcactttatccattcatgttacatttaaccctttatttaatatataatgtaattgctgcattttttctggagggcctgtaacttctgttgatcttaaactaacaattaataatagaatattggcttacaattttgtccatcgtttatgcacagTTACCATCTAGCCGAGAAGAGAATTCCTTCAGTCCATGGGTACACATCAGGATTAAAGCTTGAACAATTTATATTTGATGTATTCAACTATTCTCCTTCA

Basic information

species Zea mays
transcript GRMZM2G155729_T03
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155729_T03 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os08g10600.1 (Oryza sativa), 3'ss of exon 12
gtgagtatttttttctttccttattcttgcactttatccattcatgttacatttaaccctttatttaatatataatgtaattgctgcattttttctggagggcctgtaacttctgttgatcttaaactaacaattaataatagaatattggcttacaattttgtccatcgtttatgcacagTTACCATCTAGCCGAGAAGAGAATTCCTTCAGTCCATGGGTACACATCAGGATTAAAGCTTGAACAATTTATATTTGATGTATTCAACTATTCTCCTTCA
                                                                      |  ||||| |||| || || || |   |      |   ||||| ||      | |||| ||  ||   |    | | |  |||||  |||||    |     | ||| |||||||||| |||| |||||||  ||||||||| |||||||||||||  |||| |||||||||||||| ||||||||||| || |||| ||||||||| |||
-----------------------------------------------------------------cttcctgcaatgtgattgttggatattatacagcaa---taccacttcagtg-----tcaacttactctttccat---attttgtgctta--atttta---aaatcctgtgcccagTTACCATTTAGCAGAGAAGAAGATTCCTTCAATCCATGGGTACACGGCAGGCTTAAAGCTTGAACAGTTTATATTTGACGTGTTCACCTATTCTCCATCA

upper sequence: GRMZM2G155729_T03 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os08g10600.3 (Oryza sativa), 3'ss of exon 12
gtgagtatttttttctttccttattcttgcactttatccattcatgttacatttaaccctttatttaatatataatgtaattgctgcattttttctggagggcctgtaacttctgttgatcttaaactaacaattaataatagaatattggcttacaattttgtccatcgtttatgcacagTTACCATCTAGCCGAGAAGAGAATTCCTTCAGTCCATGGGTACACATCAGGATTAAAGCTTGAACAATTTATATTTGATGTATTCAACTATTCTCCTTCA--------------
                                                                               |||| || || || |   |      |   ||||| ||      | |||| ||  ||   |    | | |  |||||  |||||    |     | ||| |||||||||| |||| |||||||  ||||||||| |||||||||||||  |||| |||||||||||||| ||||||||||| || |||| ||||||||| |||              
-------------------------------------------------------------------------------attgttggatattatacagcaa---taccacttcagtg-----tcaacttactctttccat---attttgtgctta--atttta---aaatcctgtgcccagttaccatttagcagAGAAGAAGATTCCTTCAATCCATGGGTACACGGCAGGCTTAAAGCTTGAACAGTTTATATTTGACGTGTTCACCTATTCTCCATCAACAGCTCTTTTTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148942819|gb|EC887852.2|EC887852
EST:     AAAAGGATAGCAT                         TTACCATCTAGCCGAGAAGAGAATTCCTTCAGTCCATGGGTACACATCAGG
genomic: AAAAGGATAGCATgtgagtattt ... ttatgcacagTTACCATCTAGCCGAGAAGAGAATTCCTTCAGTCCATGGGTACACATCAGG
EST: gi|32789277|gb|CD941513.1|CD941513
EST:     ACTTTGGATTTTCTGAACCAAGTGACAAACAGTCTTGAAAAGGATAGCAT                         TTACCATCTAGCCGAGAAGAGAATTCCTTCAGTCCATGGGTACACATCAGG
genomic: ACTTTGGATTTTCTGAACCAAGTGACAAACAGTCTTGAAAAGGATAGCATgtgagtattt ... ttatgcacagTTACCATCTAGCCGAGAAGAGAATTCCTTCAGTCCATGGGTACACATCAGG
EST: gi|40303703|gb|CK348090.1|CK348090
EST:     ACTTTGGATTTTCTGAACCAAGTGACAAACAGTCTTGAAAAGGATAGCAT                         TTACCATCTAGCCGAGAAGAGAATTCCTTCAGTCCATGGGTACACATCAGG
genomic: ACTTTGGATTTTCTGAACCAAGTGACAAACAGTCTTGAAAAGGATAGCATgtgagtattt ... ttatgcacagTTACCATCTAGCCGAGAAGAGAATTCCTTCAGTCCATGGGTACACATCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaacaattaataatagaatattggcttacaattttgtccatcgtttatgcacagTTACCATCTAGCCGAGAAGAGAATTCCTTCAGTCCATGGGTACACATCAGGATTAAAGCTTGAACAATTTATATTTGATGTATTCAACTATTCTCCTTCA
     aattaataatagaata  TA-rich tract