1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtacgcccacacctcacttttctttacatgtgtatgtgttgtgcgtgttcatgtgattgggactatgcgtttattcatgcactcaatcctgagatatgtcttatactttggttgctcttttcttcaccataaaattgtccccctccatctgtcttctgaagGGTTTGGCTATGGAGATTGATGATGAGATCGCCGCTGATGACAATGACAAGGAGGTTTTGCAAGAAATAGTAAATAATACTAAGTTGAGTGAGGGATATC
species | Zea mays |
transcript | GRMZM2G155384_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGATGACCTTCTGTTGAAGAAACAATTCTCATATCTCATTGCACGCCAT GGTTTGGCTATGGAGATTGATGATGAGATCGCCGCTGATGACAATGACAAGEST: gi|32832565|gb|CD972243.1|CD972243
genomic: CTGATGACCTTCTGTTGAAGAAACAATTCTCATATCTCATTGCACGCCATgtacgcccac ... tcttctgaagGGTTTGGCTATGGAGATTGATGATGAGATCGCCGCTGATGACAATGACAAG
EST: CTGATGACCTTCTGTTGAAGAAACAATTCTCATATCTCATTGCACGCCAT GGTTTGGCTATGGAGATTGATGATGAGATCGCCGCTGATGACAATGACAAGEST: gi|32934754|gb|CF039566.1|CF039566
genomic: CTGATGACCTTCTGTTGAAGAAACAATTCTCATATCTCATTGCACGCCATgtacgcccac ... tcttctgaagGGTTTGGCTATGGAGATTGATGATGAGATCGCCGCTGATGACAATGACAAG
EST: CTGATGACCTTCTGTTGAAGAAACAATTCTCATATCTCATTGCACGCCAT GGTTTGGCTATGGAGATTGATGATGAGATCGCCGCTGATGACAATGACAAGEST: gi|32834497|gb|CD974175.1|CD974175
genomic: CTGATGACCTTCTGTTGAAGAAACAATTCTCATATCTCATTGCACGCCATgtacgcccac ... tcttctgaagGGTTTGGCTATGGAGATTGATGATGAGATCGCCGCTGATGACAATGACAAG
EST: CTGATGACCTTCTGTTGAAGAAACAATTCTCATATCTCATTGCACGCCAT GGTTTGGCTATGGAGATTGATGATGAGATCGCCGCTGATGACAATGACAAGEST: gi|32833976|gb|CD973654.1|CD973654
genomic: CTGATGACCTTCTGTTGAAGAAACAATTCTCATATCTCATTGCACGCCATgtacgcccac ... tcttctgaagGGTTTGGCTATGGAGATTGATGATGAGATCGCCGCTGATGACAATGACAAG
EST: CTGATGACCTTCTGTTGAAGAAACAATTCTCATATCTCATTGCACGCCAT GGTTTGGCTATGGAGATTGATGATGAGATCGCCGCTGATGACAATGACAAGEST: gi|32835155|gb|CD974833.1|CD974833
genomic: CTGATGACCTTCTGTTGAAGAAACAATTCTCATATCTCATTGCACGCCATgtacgcccac ... tcttctgaagGGTTTGGCTATGGAGATTGATGATGAGATCGCCGCTGATGACAATGACAAG
EST: CTGATGACCTTCTGTTGAAGAAACAATTCTCATATCTCATTGCACGCCAT GGTTTGGCTATGGAGATTGATGATGAGATCGCCGCTGATGACAATGACAAG
genomic: CTGATGACCTTCTGTTGAAGAAACAATTCTCATATCTCATTGCACGCCATgtacgcccac ... tcttctgaagGGTTTGGCTATGGAGATTGATGATGAGATCGCCGCTGATGACAATGACAAG
tttggttgctcttttcttcaccataaaattgtccccctccatctgtcttctgaagGGTTTGGCTATGGAGATTGATGATGAGATCGCCGCTGATGACAATGACAAGGAGGTTTTGCAAGAAATAGTAAATAATACTAAGTTGAGTGAGGGATATC
ttgtccccctccatct CT-rich tract
ataaaattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcccacacctcacttttctttacatgtgtatgtgttgtgcgtgttcatgtgattgggactatgcgtttattcatgcactcaatcctgagatatgtcttatactttggttgctcttttcttcaccataaaattgtccccctccatctgtcttctgaagGGTTTGGCTATGGAGATTGATGATGAGATCGCCGCTGATGACAATGACAAGGAGGTTTTGCAAGAAATAGTAAATAATACTAAGTTGAGTGAGGGATATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA