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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ataaattagatttagatatgaaattcatatggcaacaaactctatattatcatatatggttatattattgctttcgtcatttggaactgtatttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG

Basic information

species Zea mays
transcript GRMZM2G153704_T01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G153704_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os01g04190.2 (Oryza sativa), 3'ss of exon 7
ataaattagatttagatatgaaattcatatggcaacaaactctatattat-catatatggttatatt---attgctttcgt-catttggaactgtatttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG
   ||    |||  | |   |||   | ||||||||||||| | ||| |     |  | ||||||||   |||| |||| |   | ||   |||||| |||| ||||||||||||||||| |||||| |  | |||||||||||| |||| ||| | || |||||  |||| |||||||||||||||||||||||||||
--gaacagcattgtgctgaaaaa---agatggcaacaaactttgtatgacatgcaggttgttatattcacattgttttcatatgtatgtgtctgtatgtaataagGTGGAGGACAATGTTCGGAATTTCAATTGTTCCATCCATTTTGCTTGCTCTTGGGATGGCTGTTTCACCTGAAAGCCCTCGTTGGCTATTCCAG

upper sequence: GRMZM2G153704_T01 (Zea mays), 3'ss of exon 11
lower sequence: Vv14s0006g02720.t01 (Vitis vinifera), 3'ss of exon 7
---ataaattagatttagatatgaaa--ttcatatggcaacaaactctatattatcatatatggttatattattgctttcgtcatttggaactgtatttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG
    |  |||    |||  |  ||||  |||  |  |||     | ||   | ||| | | |  | || |   |  ||  ||  | |     | | |||||||||||||||||||||||||||  ||||||| || || || |||||  ||||| | |||||||| ||||| || || || ||||| ||||| || |||
cttctccattctgcttatttcagaaaacttccaagtgcagtgttcactgc-tcatcctctctt-tcatgtagctcattatgttttctaa---tttttttaatcagGTGGAGGACAATGTTTGGTGTTGCTGTTGTCCCCTCTATTCTATTGGCTTTGGGAATGGCATTTTCTCCAGAGAGTCCTCGGTGGCTTTTTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60400456|gb|DN233263.1|DN233263
EST:     ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTG                         GTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
genomic: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttc ... atttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
EST: gi|32832104|gb|CD971782.1|CD971782
EST:     ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTG                         GTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
genomic: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttc ... atttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
EST: gi|61119088|gb|DN560049.1|DN560049
EST:     CTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTG                         GTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
genomic: CTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttc ... atttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
EST: gi|67035008|gb|CO463541.1|CO463541
EST:     ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTG                         GTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
genomic: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttc ... atttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
EST: gi|67037358|gb|CO464198.1|CO464198
EST:     ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTG                         GTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
genomic: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttc ... atttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
EST: gi|78075828|gb|DV504262.1|DV504262
EST:     ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTG                         GTGGAGGACAAATGGTTGGATTTGCTG
genomic: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttc ... atttaatcagGTGGAGGACAA-TGTTTGGAATTGCTG
EST: gi|211050167|gb|FL124868.1|FL124868
EST:     ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTG                         GTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
genomic: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttc ... atttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
EST: gi|78078828|gb|DV507240.1|DV507240
EST:     ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTG                         GTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
genomic: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttc ... atttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
EST: gi|32847646|gb|CD987327.1|CD987327
EST:     ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTG                         GTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
genomic: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttc ... atttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
EST: gi|32835079|gb|CD974757.1|CD974757
EST:     ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTG                         GTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
genomic: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttc ... atttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
EST: gi|148953947|gb|EC899333.2|EC899333
EST:     ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTG                         GTGGAGGACAATGTTTGGAATTGCT
genomic: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttc ... atttaatcagGTGGAGGACAATGTTTGGAATTGCT
EST: gi|22545719|gb|BU098078.1|BU098078
EST:     ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTG                         GTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT
genomic: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAGGAAATCCTGCCTGgtaagttttc ... atttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attatcatatatggttatattattgctttcgtcatttggaactgtatttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTCTGCTGGCTGTAGGAATGGCCTTTTCGCCTGAAAGCCCTCGTTGGCTATTCCAG
      atatatggttatatta  TA-rich tract