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gtgagtgttataaatacttcatttttattctaggagtcataaatagagccgagctgatgtgtttcttgtctgtgcaacccactctcagGTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAACCACCAAAGATTGCTGGAGCTGATCATGATAAGCTGGAGTAGGAATCAA
species | Zea mays |
transcript | GRMZM2G152888_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TATGCATTTCTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGAT GTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAAEST: gi|76014232|gb|DT941402.1|DT941402
genomic: TATGCATTTCTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGATgtgagtgtta ... ccactctcagGTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAA
EST: TATGCATTTTTGCTTCACATACTAGGGAGGGCCTGATGAAAGCCCTTGAT GTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAAEST: gi|32834771|gb|CD974449.1|CD974449
genomic: TATGCATTTCTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGATgtgagtgtta ... ccactctcagGTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAA
EST: TATGCATTTCTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGAT GTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAAEST: gi|22545658|gb|BU098017.1|BU098017
genomic: TATGCATTTCTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGATgtgagtgtta ... ccactctcagGTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAA
EST: TATGCATTTCTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGAT GTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAAEST: gi|213170493|gb|FM189407.1|FM189407
genomic: TATGCATTTCTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGATgtgagtgtta ... ccactctcagGTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAA
EST: TATGCATTTCTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGAT GTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAAEST: gi|32846670|gb|CD986351.1|CD986351
genomic: TATGCATTTCTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGATgtgagtgtta ... ccactctcagGTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAA
EST: TATGCATTTCTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGAT GTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAAEST: gi|71306654|gb|DR789487.1|DR789487
genomic: TATGCATTTCTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGATgtgagtgtta ... ccactctcagGTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAA
EST: TATGCATTTCTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGAT GTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAAEST: gi|78083289|gb|DV511682.1|DV511682
genomic: TATGCATTTCTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGATgtgagtgtta ... ccactctcagGTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAA
EST: TATGCATTTTTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGAT GTTATCAGCAGAGTTGGGGACCTTGTGGGCATCAAATACTTCCCTGCAGAAEST: gi|87157213|gb|DY402002.1|DY402002
genomic: TATGCATTTCTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGATgtgagtgtta ... ccactctcagGTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAA
EST: TATGCATTTCTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGAT GTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAAEST: gi|78078704|gb|DV507116.1|DV507116
genomic: TATGCATTTCTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGATgtgagtgtta ... ccactctcagGTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAA
EST: TATGCATTTTTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGAT GTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAAEST: gi|60341232|gb|DN208205.1|DN208205
genomic: TATGCATTTCTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGATgtgagtgtta ... ccactctcagGTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAA
EST: TATGCATTTCTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGAT GTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAAEST: gi|32835583|gb|CD975261.1|CD975261
genomic: TATGCATTTCTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGATgtgagtgtta ... ccactctcagGTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAA
EST: TATGCATTTCTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGAT GTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAAEST: gi|76011503|gb|DT938673.1|DT938673
genomic: TATGCATTTCTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGATgtgagtgtta ... ccactctcagGTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAA
EST: TATGCATTTCTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGAT GTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAAEST: gi|211357460|gb|FL472118.1|FL472118
genomic: TATGCATTTCTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGATgtgagtgtta ... ccactctcagGTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAA
EST: TATGCATTTCTGCTTCACATACTAGGGAGGACYTGATGAAAGCCCTTGAT GTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAAEST: gi|86471728|gb|DY238098.1|DY238098
genomic: TATGCATTTCTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGATgtgagtgtta ... ccactctcagGTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAA
EST: TATGCATTTTTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGAT GTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAA
genomic: TATGCATTTCTGCTTCACATACTAGGGAGGACCTGATGAAAGCCCTTGATgtgagtgtta ... ccactctcagGTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAA
gagtcataaatagagccgagctgatgtgtttcttgtctgtgcaacccactctcagGTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAACCACCAAAGATTGCTGGAGCTGATCATGATAAGCTGGAGTAGGAATCAA
agctgat putative branch site (score: 49)
cccactctc putative PPT
ataaataga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgttataaatacttcatttttattctaggagtcataaatagagccgagctgatgtgtttcttgtctgtgcaacccactctcagGTTATCAGCAGAGTTGGCGACCTTGTGGGCATCAAATACTTCCCTGCAGAACCACCAAAGATTGCTGGAGCTGATCATGATAAGCTGGAGTAGGAATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA