1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...atgctaacacaggccttgcgtactgttaaattgtttcttacatctacttgtgtactgcttcgatttataagattctattctaattttttcttccattcagGATTCTGCCAGGGCCTCTGCTGTGTGTACACTTTATATGCTTAAGCGCCAACATTTGAAG
species | Zea mays |
transcript | GRMZM2G151236_T03 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCTGCAGACCTTGTTGCATGCACTTATCATTTGGATATGTTCTGTTGCTT GATTCTGCCAGGGCCTCTGCTGTGTGTACACTTTATATGCTTAAGCGCCAAEST: gi|32802193|gb|CD954429.1|CD954429
genomic: TCTGCAGACCTTGTTGCATGCACTTATCATTTGGATATGTTCTGTTGCTTgtaagacaac ... ttccattcagGATTCTGCCAGGGCCTCTGCTGTGTGTACACTTTATATGCTTAAGCGCCAA
EST: TCTGCAGACCTTGTTGCATGCACTTATCATTTGGATATGTTCTGTTGCTT GATTCTGCCAGGTCCTCTGCTGTGTGTACACTTTATATGCTTAEST: gi|32804525|gb|CD956761.1|CD956761
genomic: TCTGCAGACCTTGTTGCATGCACTTATCATTTGGATATGTTCTGTTGCTTgtaagacaac ... ttccattcagGATTCTGCCAGGGCCTCTGCTGTGTGTACACTTTATATGCTTA
EST: TCTGCAGACCTTGTTGCATGCACTTATCATTTGGATATGTTCTGTTGCTT GATTCTGCCAGGTCCTCTGCTGTGTGTACACTTTATATACTTAEST: gi|32802413|gb|CD954649.1|CD954649
genomic: TCTGCAGACCTTGTTGCATGCACTTATCATTTGGATATGTTCTGTTGCTTgtaagacaac ... ttccattcagGATTCTGCCAGGGCCTCTGCTGTGTGTACACTTTATATGCTTA
EST: TCTGCAGACCTTGTTGCATGCACTTATCATTTGGATATGTTCTGTTGCTT GATTCTGCCAGGTACTCTGCTGTGTGTACACTTTATATGCTTAEST: gi|9731581|gb|BE510333.1|BE510333
genomic: TCTGCAGACCTTGTTGCATGCACTTATCATTTGGATATGTTCTGTTGCTTgtaagacaac ... ttccattcagGATTCTGCCAGGGCCTCTGCTGTGTGTACACTTTATATGCTTA
EST: TCTGCAGACCTTGTTGCATGCACTTATCATTTGGATATGTTCTGTTGCTT GATTCTGCCAGGGCCTCTGCTGTGTGTACACTTTATATGCTTAAGCGCCAA
genomic: TCTGCAGACCTTGTTGCATGCACTTATCATTTGGATATGTTCTGTTGCTTgtaagacaac ... ttccattcagGATTCTGCCAGGGCCTCTGCTGTGTGTACACTTTATATGCTTAAGCGCCAA
acttgtgtactgcttcgatttataagattctattctaattttttcttccattcagGATTCTGCCAGGGCCTCTGCTGTGTGTACACTTTATATGCTTAAGCGCCAACATTTGAAG
ttctaat putative branch site (score: 84)
ttctattctaattttt CT-rich tract
atttataagattctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgctaacacaggccttgcgtactgttaaattgtttcttacatctacttgtgtactgcttcgatttataagattctattctaattttttcttccattcagGATTCTGCCAGGGCCTCTGCTGTGTGTACACTTTATATGCTTAAGCGCCAACATTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
atgctaa
- - - - - - gccttgc
- - - - - - - - - - - - - - - -tgtttct
- - - - - - - - - - - - - - - - - - - - - -ctacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcttc