1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgttggttcctgttcatctcctgccattgctacagccaacataccagttttcatgcagtgagtactaatccaggtctcatgtattgcagGAGGAAGCTCTTCAGGTACACTTCCGTTACCATTGGCTGCTTTCGTGAGCCTCACAATCACATACAAGCTTGACAAGGCATCAGAGTGTTTCCTCAACCT
species | Zea mays |
transcript | GRMZM2G150754_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CAAGAAAATCGTAGCTGCTACCGGTGTTGATGTTCCAAAGCTAGTTACAG GAGGAAGCTCTTCAGGTACACTTCCGTTACCATTGGCTGCTTTCGTGAGCCEST: gi|78111061|gb|DV529458.1|DV529458
genomic: CAAGAAAATCGTAGCTGCTACCGGTGTTGATGTTCCAAAGCTAGTTACAGgtgttggttc ... tgtattgcagGAGGAAGCTCTTCAGGTACACTTCCGTTACCATTGGCTGCTTTCGTGAGCC
EST: CNNNNNNNTCGTAGCTGCTACCGGTGTTGATGTTCCAAAGCTAGTTACAG GAGGAAGCTCTTCAGGTACACTTCCGTTACCATTGGCTGCTTTCGTGAGCCEST: gi|91873721|gb|EB403678.1|EB403678
genomic: CAAGAAAATCGTAGCTGCTACCGGTGTTGATGTTCCAAAGCTAGTTACAGgtgttggttc ... tgtattgcagGAGGAAGCTCTTCAGGTACACTTCCGTTACCATTGGCTGCTTTCGTGAGCC
EST: CNNNNNNNTCGTAGCTGCTACCGGTGTTGATGTTCCAAAGCTAGTTACAG GAGGAAGCTCTTCAGGTACACTTCCGTTACCATTGGCTGCTTTCGTGAGCCEST: gi|91876724|gb|EB406681.1|EB406681
genomic: CAAGAAAATCGTAGCTGCTACCGGTGTTGATGTTCCAAAGCTAGTTACAGgtgttggttc ... tgtattgcagGAGGAAGCTCTTCAGGTACACTTCCGTTACCATTGGCTGCTTTCGTGAGCC
EST: CAAGAAAATCGTAGCTGCTACCGGTGTTGATGTTCCAAAGCTAGTTACAG GAGGAAGCTCTTCAGGTACACTTCCGTTACCATTGGCTGCTTTCGTGAGCC
genomic: CAAGAAAATCGTAGCTGCTACCGGTGTTGATGTTCCAAAGCTAGTTACAGgtgttggttc ... tgtattgcagGAGGAAGCTCTTCAGGTACACTTCCGTTACCATTGGCTGCTTTCGTGAGCC
gccaacataccagttttcatgcagtgagtactaatccaggtctcatgtattgcagGAGGAAGCTCTTCAGGTACACTTCCGTTACCATTGGCTGCTTTCGTGAGCCTCACAATCACATACAAGCTTGACAAGGCATCAGAGTGTTTCCTCAACCT
tactaat putative branch site (score: 1)
ttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttggttcctgttcatctcctgccattgctacagccaacataccagttttcatgcagtgagtactaatccaggtctcatgtattgcagGAGGAAGCTCTTCAGGTACACTTCCGTTACCATTGGCTGCTTTCGTGAGCCTCACAATCACATACAAGCTTGACAAGGCATCAGAGTGTTTCCTCAACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT