1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cctgtttcccacccccaaaaaaagggtaagcatgctataaaaaaatatgtatgagaattcaggactttctgagttgtgagcacgtttcttacaaatgcagCTGCTGGAGTTCGACGAGTCAAAAGCTGAGGCGGAGGAAGGCGGTGCAGAAGGAGAGCAAGATGGTGATGGTTCCAAAGCCAGCAAAAAGGTGGACTAGC
species | Zea mays |
transcript | GRMZM2G150251_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGATCGGATTCGTCGCCGTACACTGTCTCTGGTACGGAGAAGTGAAACAG CTGCTGGAGTTCGACGAGTCAAAAGCTGAGGCGGAGGAAGGCGGTGCAGAAEST: gi|78123104|gb|DV541488.1|DV541488
genomic: TGATCGGATTCGTCGCCGTACACTGTCTCTGGTACGGAGAAGTGAAACAGgtcagattct ... acaaatgcagCTGCTGGAGTTCGACGAGTCAAAAGCTGAGGCGGAGGAAGGCGGTGCAGAA
EST: TGATCGGATTCGTCGCCGTACACTGTCTCTGGTACGGAGAAGTGAAACAG CTGCTGGAGTTCGACGAGTCAAAAGCTGAGGCGGAGGAAGGCGGTGCAGAAEST: gi|60337558|gb|DN204531.1|DN204531
genomic: TGATCGGATTCGTCGCCGTACACTGTCTCTGGTACGGAGAAGTGAAACAGgtcagattct ... acaaatgcagCTGCTGGAGTTCGACGAGTCAAAAGCTGAGGCGGAGGAAGGCGGTGCAGAA
EST: TGATCGGATTCGTCGCCGTACACTGTCTCTGGTACGGAGAAGTGAAACAG CTGCTGGAGTTCGACGAGTCAAAAGCTGAGGCGGAGGAAGGCGGTGCAGAAEST: gi|76282340|gb|DV021908.1|DV021908
genomic: TGATCGGATTCGTCGCCGTACACTGTCTCTGGTACGGAGAAGTGAAACAGgtcagattct ... acaaatgcagCTGCTGGAGTTCGACGAGTCAAAAGCTGAGGCGGAGGAAGGCGGTGCAGAA
EST: TGATCGGATTCGTCGCCGTACACTGTCTCTGGTACGGAGAAGTGAAACAG CTGCTGGAGTTCGACGAGTCAAAAGCTGAGGCGGAGGAAGGCGGTGCAGAAEST: gi|9794490|gb|BE552798.1|BE552798
genomic: TGATCGGATTCGTCGCCGTACACTGTCTCTGGTACGGAGAAGTGAAACAGgtcagattct ... acaaatgcagCTGCTGGAGTTCGACGAGTCAAAAGCTGAGGCGGAGGAAGGCGGTGCAGAA
EST: TGATCGGATTCGTCGCCGTACACTGTCTCTGGTACGGAGAAGTGAAACAG CTGCTGGAGTTCGACGAGTCAAAAGCTGAGGCGGAGGAAGGCGGTGCAGAA
genomic: TGATCGGATTCGTCGCCGTACACTGTCTCTGGTACGGAGAAGTGAAACAGgtcagattct ... acaaatgcagCTGCTGGAGTTCGACGAGTCAAAAGCTGAGGCGGAGGAAGGCGGTGCAGAA
tatgtatgagaattcaggactttctgagttgtgagcacgtttcttacaaatgcagCTGCTGGAGTTCGACGAGTCAAAAGCTGAGGCGGAGGAAGGCGGTGCAGAAGGAGAGCAAGATGGTGATGGTTCCAAAGCCAGCAAAAAGGTGGACTAGC
ttcttac putative branch site (score: 2)
tttcttac CT-rich tract
ttacaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctgtttcccacccccaaaaaaagggtaagcatgctataaaaaaatatgtatgagaattcaggactttctgagttgtgagcacgtttcttacaaatgcagCTGCTGGAGTTCGACGAGTCAAAAGCTGAGGCGGAGGAAGGCGGTGCAGAAGGAGAGCAAGATGGTGATGGTTCCAAAGCCAGCAAAAAGGTGGACTAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA