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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaattccttcgtccacgtctcctcgtcatcctcatcctctctgccgctatagcttattatgccgcttcctggacggacctgaacgatggcctgctttgcttctctgccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAG

Basic information

species Zea mays
transcript GRMZM2G146463_T01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146463_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os07g26900.1 (Oryza sativa), 3'ss of exon 9
gtcaattccttcgtccacgtctcctcgtcatcctcatcctctctgccgctatagcttattatgccgcttcctggacggacctgaacgatggcctgctttgcttctctgccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAG
                        | |    |||| ||  ||  | ||   | | | ||    | |||      |   | |||   |   | |||  |    | | | || | ||||| |||||||||||||||||||| || ||||| ||| || || ||||||||||||||||| ||||||| ||||| || ||||||
---------------------gtatagctggcctcctcaccttcgtcgtcttcgttgat----ctgct------atatatctgtctgtctgtctgtctctaatttgttcc-ctgcagATCCTGACATGCTGGAGGTCGGCAATGGAGGGATGACGAACGACGAGTACGTCGTGCACATCAGCCTTTGGGCGATTGCCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78113279|gb|DV531671.1|DV531671
EST:     CGACCTGAACGACGCCTACGCCCGGTACGCCNAGCCCGGCGGCTGGGACG                         ACCCTGACATGCTGGAGGTCGGGGACGGAGGCATGGCGTACAACGAGTACG
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
EST: gi|23199550|gb|BU582115.1|BU582115
EST:     CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG                         ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
EST: gi|22472587|gb|BU037067.1|BU037067
EST:     CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG                         ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
EST: gi|26560002|gb|CA832237.1|CA832237
EST:     CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG                         ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
EST: gi|22935898|gb|BU572173.1|BU572173
EST:     CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG                         ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
EST: gi|149055656|gb|EE156361.2|EE156361
EST:     CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG                         ACCCTGACATGCTGGAGGT
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGT
EST: gi|78075209|gb|DV503643.1|DV503643
EST:     GACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCCGGCGGCTGGAACG                         ACCCTGACATGCTGG
genomic: GACCTGAACGACGCCTACGCCCGGTACGCCAAGCCC-GGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGG
EST: gi|26559550|gb|CA831785.1|CA831785
EST:     CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG                         ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACG
EST: gi|71443280|gb|DR824330.1|DR824330
EST:     CGACCTGAACGACGCCTACGCCCGGTACGCCNAGCCCGGCGGCTGGAACG                         ACCCTGACATGC
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGC
EST: gi|71318127|gb|DR795825.1|DR795825
EST:     CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACG                         ACCCTGACATGC
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGC
EST: gi|78110547|gb|DV528957.1|DV528957
EST:     GACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCCGGCGGCTGGAACG                         ACCCTGACATGCTG
genomic: GACCTGAACGACGCCTACGCCCGGTACGCCAAGCCC-GGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTG
EST: gi|148973153|gb|EE024223.2|EE024223
EST:     CGACCTGAACGACGCCTACGCCCCGTACGCCCAGCCCGGCGGCTGGAACG                         ACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGT
genomic: CGACCTGAACGACGCCTACGCCCGGTACGCCAAGCCCGGCGGCTGGAACGgtcaattcct ... gccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccgcttcctggacggacctgaacgatggcctgctttgcttctctgccgcagcagACCCTGACATGCTGGAGGTCGGGAACGGAGGCATGGCGTACAACGAGTACGTCGTGCACTTCAGCCTCTGGGCCATCGCCAAG
                                 ctttgcttctctgcc  CT-rich tract