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gtagtaatgcggtagtgtgtttccaccctgttgcattctaaatttatgcacggagaattccagtggatacattaaccagacctatgctagggagcctgtatccatggaacctctaaatttgaagtgacgatacatgtactattttgcctcagATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGCTTGCATGCTGCTGATCTCATCCATGAGGCATCAAATGCCATTGCCCTTG
species | Zea mays |
transcript | GRMZM2G145595_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGGCTAACACAAAGGCCCTGGCAGAGAATGAAGGAGATGGACTTGCTAAG ATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGCEST: gi|20512800|gb|BQ279999.1|BQ279999
genomic: AGGCTAACACAAAGGCCCTGGCAGAGAATGAAGGAGATGGACTTGCTAAGgtagtaatgc ... tttgcctcagATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGC
EST: AGGGTAACACAAAGGCCCTGGCAGAGAATGAAGGAGATGGACTTGCTAAG ATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGCEST: gi|13249875|gb|BG360780.1|BG360780
genomic: AGGCTAACACAAAGGCCCTGGCAGAGAATGAAGGAGATGGACTTGCTAAGgtagtaatgc ... tttgcctcagATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGC
EST: AGGCTAACACAAAGGCCCTGGCAGAGAATGAAGGAGATGGACTTGCTAAG ATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGCEST: gi|211093993|gb|FL455618.1|FL455618
genomic: AGGCTAACACAAAGGCCCTGGCAGAGAATGAAGGAGATGGACTTGCTAAGgtagtaatgc ... tttgcctcagATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGC
EST: GGCTAACACAAAAGGCCCTGGCAGAGAATGAAGGAGATGGACTTGCTAAG ATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGCEST: gi|211470346|gb|FL451277.1|FL451277
genomic: GGCTAACAC-AAAGGCCCTGGCAGAGAATGAAGGAGATGGACTTGCTAAGgtagtaatgc ... tttgcctcagATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGC
EST: AGGCTAACACAAAGGCCCTGGCAGAGAATGAAGGAGATGGACTTGCTAAG ATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGCEST: gi|16378429|gb|BI992442.1|BI992442
genomic: AGGCTAACACAAAGGCCCTGGCAGAGAATGAAGGAGATGGACTTGCTAAGgtagtaatgc ... tttgcctcagATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGC
EST: AGGCTANCACAAAGGCCCTGGCAGAGAATGAAGGAGATGGACTTGCTAAG ATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGCEST: gi|6865111|gb|AW360461.1|AW360461
genomic: AGGCTAACACAAAGGCCCTGGCAGAGAATGAAGGAGATGGACTTGCTAAGgtagtaatgc ... tttgcctcagATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGC
EST: AGGAGATGGCCTTGCTAAG ATGATTTATCGCCCTGACNCCGGAGAAATTCTTGGAGTTCATATTTTGGGCEST: gi|13249874|gb|BG360779.1|BG360779
genomic: AGGAGATGGACTTGCTAAGgtagtaatgc ... tttgcctcagATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGC
EST: AGGCTAACGCAAAGGCCCTGGCAGAGAATGAAGGAGATGGACTTGCTAAG ATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGCEST: gi|32830615|gb|CD970293.1|CD970293
genomic: AGGCTAACACAAAGGCCCTGGCAGAGAATGAAGGAGATGGACTTGCTAAGgtagtaatgc ... tttgcctcagATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGC
EST: AGGCTAACACAAAGGCCCTGGCAGAGAATGAAGGAGATGGACTTGCTAAG ATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGCEST: gi|26456706|gb|CA828289.1|CA828289
genomic: AGGCTAACACAAAGGCCCTGGCAGAGAATGAAGGAGATGGACTTGCTAAGgtagtaatgc ... tttgcctcagATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGC
EST: AGGCTAACACAAAGGCCCTGGCAGAGAATGAAGGAGATGGACTTGCTAAG ATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGCEST: gi|32830552|gb|CD970230.1|CD970230
genomic: AGGCTAACACAAAGGCCCTGGCAGAGAATGAAGGAGATGGACTTGCTAAGgtagtaatgc ... tttgcctcagATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGC
EST: AGGCTAACACAAAGGCCCTGGCAGAGAATGAAGGAGATGGACTTGCTAAG ATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGCEST: gi|32831600|gb|CD971278.1|CD971278
genomic: AGGCTAACACAAAGGCCCTGGCAGAGAATGAAGGAGATGGACTTGCTAAGgtagtaatgc ... tttgcctcagATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGC
EST: AGGCTAACACAAAGGCCCTGGCAGAGAATGAAGGAGATGGACTTGCTAAG ATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGCEST: gi|211093992|gb|FL455617.1|FL455617
genomic: AGGCTAACACAAAGGCCCTGGCAGAGAATGAAGGAGATGGACTTGCTAAGgtagtaatgc ... tttgcctcagATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGC
EST: AGGCTAACACAAAGGCCCTGGCAGAGAATGAAGGAGATGGACTTGCTAAG ATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGC
genomic: AGGCTAACACAAAGGCCCTGGCAGAGAATGAAGGAGATGGACTTGCTAAGgtagtaatgc ... tttgcctcagATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGC
gtatccatggaacctctaaatttgaagtgacgatacatgtactattttgcctcagATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGCTTGCATGCTGCTGATCTCATCCATGAGGCATCAAATGCCATTGCCCTTG
ctctaaa putative branch site (score: 15)
ttttgcctc putative PPT
taaatttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtaatgcggtagtgtgtttccaccctgttgcattctaaatttatgcacggagaattccagtggatacattaaccagacctatgctagggagcctgtatccatggaacctctaaatttgaagtgacgatacatgtactattttgcctcagATGATTTATCGCCCTGACACCGGAGAAATTCTTGGAGTTCATATTTTGGGCTTGCATGCTGCTGATCTCATCCATGAGGCATCAAATGCCATTGCCCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT