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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctatattcctggtatgtttaagtgtatccttttttttggtttaagcaaatttaccacacactaatcaaaagattcaaaacgatcttttgtgttttgcagGAACCAAATAAGATTGATGGTTGGTTGAAACGCTTGCCATTAACGTTTCAGTGTTTAGATACGGGAGGTTTGTACCTCCTTGATGATGGCTTCACTTTCT

Basic information

species Zea mays
transcript GRMZM2G143725_T01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|61118766|gb|DN559727.1|DN559727
EST:     TCAATTTTATCTATCCTTCTTTGTACAGAGTCGATGAAGTATNAACAATG                         GAACCAAATAAGATTGATGGTTGGTTGAAACGCTTGCCA
genomic: TCAATTTTATCTATCCTTCTTTGTACAGAGTCGATGAAGTATTAACAATGgtatgttgtt ... tgttttgcagGAACCAAATAAGATTGATGGTTGGTTGAAACGCTTGCCA
EST: gi|211056537|gb|FL371329.1|FL371329
EST:     CGATGAAGTATTAACAATG                         GAACCAAACAAGATTGATGGTTGGTTGAAACGCTTGCCATTAACGTTTCAG
genomic: CGATGAAGTATTAACAATGgtatgttgtt ... tgttttgcagGAACCAAATAAGATTGATGGTTGGTTGAAACGCTTGCCATTAACGTTTCAG
EST: gi|211478592|gb|FL369719.1|FL369719
EST:     CGATGAAGTATTAACAATG                         GAACCAAACAAGATTGATGGTTGGTTGAAACGCTTGCCATTAACGTTTCAG
genomic: CGATGAAGTATTAACAATGgtatgttgtt ... tgttttgcagGAACCAAATAAGATTGATGGTTGGTTGAAACGCTTGCCATTAACGTTTCAG
EST: gi|211424168|gb|FL418879.1|FL418879
EST:     CGATGAAGTATTAACAATG                         GAACCAAACAAGATTGATGGTTGGTTGAAACGCTTGCCATTAACGTTTCAG
genomic: CGATGAAGTATTAACAATGgtatgttgtt ... tgttttgcagGAACCAAATAAGATTGATGGTTGGTTGAAACGCTTGCCATTAACGTTTCAG
EST: gi|211169647|gb|FL398212.1|FL398212
EST:     CGATGAAGTATTAACAATG                         GAACCAAACAAGATTGATGGTTGGTTGAAACGCTTGGCATTAACGTTTCAG
genomic: CGATGAAGTATTAACAATGgtatgttgtt ... tgttttgcagGAACCAAATAAGATTGATGGTTGGTTGAAACGCTTGCCATTAACGTTTCAG
EST: gi|211504702|gb|FL413778.1|FL413778
EST:     CGATGAAGTATTAACAATG                         GAACCAAACAAGATTGATGGTTGGTTGAAACGCTTGCCATTAACGTTTCAG
genomic: CGATGAAGTATTAACAATGgtatgttgtt ... tgttttgcagGAACCAAATAAGATTGATGGTTGGTTGAAACGCTTGCCATTAACGTTTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaaatttaccacacactaatcaaaagattcaaaacgatcttttgtgttttgcagGAACCAAATAAGATTGATGGTTGGTTGAAACGCTTGCCATTAACGTTTCAGTGTTTAGATACGGGAGGTTTGTACCTCCTTGATGATGGCTTCACTTTCT
              cactaat  putative branch site (score: 2)
                                      tcttttgt  putative PPT
                 taatcaaaa  TA-rich tract