1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagcatgtaattgctgaactctgccatcctcccacttcatagatatttgagatcacataattatcctttggatctgttttttttatattcagCTTGAGTCCATGGGGTTCGACAGAGCACGCGTTATTGAAGCATTCTTAGCCTGCGATAGGAACGAGGAGCTAGCAGCAAACTATCTCCTTGAGCATGCTG
species | Zea mays |
transcript | GRMZM2G143462_T06 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGCCTCACGCCATTAGTGTTACACCAGAGGAGCAGGAGGCCATTGGACGG CTTGAGTCCATGGGGTTCGACAGAGCACGCGTTATEST: gi|78025477|gb|DV493864.1|DV493864
genomic: TGCCTCATGCCATTAGTGTTACACCAGAGGAGCAGGAGGCCATTGGACGGgtaagcatgt ... ttatattcagCTTGAGTCCATGGGGTTCGACAGAGCACGCGTTAT
EST: TGCCTCACGCCATTAGTGTTACACCAGAGGAGCAGGAGGCCATTGGACGG CTTGAGTCCATGGGGTTCGACAGAGCACGCGTTATCGAAGCATTCTTAGCCEST: gi|71764241|gb|DR962178.1|DR962178
genomic: TGCCTCATGCCATTAGTGTTACACCAGAGGAGCAGGAGGCCATTGGACGGgtaagcatgt ... ttatattcagCTTGAGTCCATGGGGTTCGACAGAGCACGCGTTATTGAAGCATTCTTAGCC
EST: TGCCTCATGCCATTAGTGTTACACCAGAGGAGCAGGAGGCCATTGGACGG CTTGAGTCCATGGGGTTCGACAGAGCACGCGTTATTGAAGCATTCTTAGCCEST: gi|22489727|gb|BU049650.1|BU049650
genomic: TGCCTCATGCCATTAGTGTTACACCAGAGGAGCAGGAGGCCATTGGACGGgtaagcatgt ... ttatattcagCTTGAGTCCATGGGGTTCGACAGAGCACGCGTTATTGAAGCATTCTTAGCC
EST: TGCCTCATGCCATTAGTGTTACACCAGAAGAGCAGGAGGCCATTGGACGG CTTGAGTCCATGGGGTTCGACAGAGCACGCGTTATTGAAGCATTCTTAGCC
genomic: TGCCTCATGCCATTAGTGTTACACCAGAGGAGCAGGAGGCCATTGGACGGgtaagcatgt ... ttatattcagCTTGAGTCCATGGGGTTCGACAGAGCACGCGTTATTGAAGCATTCTTAGCC
catagatatttgagatcacataattatcctttggatctgttttttttatattcagCTTGAGTCCATGGGGTTCGACAGAGCACGCGTTATTGAAGCATTCTTAGCCTGCGATAGGAACGAGGAGCTAGCAGCAAACTATCTCCTTGAGCATGCTG
tctgttttttttat CT-rich tract
atctgttttttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcatgtaattgctgaactctgccatcctcccacttcatagatatttgagatcacataattatcctttggatctgttttttttatattcagCTTGAGTCCATGGGGTTCGACAGAGCACGCGTTATTGAAGCATTCTTAGCCTGCGATAGGAACGAGGAGCTAGCAGCAAACTATCTCCTTGAGCATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG