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gtagtctcatatgctcgtccagttgtaatacagcttggctccattaacaggaactaactagctgtttgtgatcttcagCAACATTTTTCGCGTGTTTGGTTGCCGTTCTGGTAGCAGTGAAGCAACAACACTTGAAGCAACCCGAAACCCTACAAG
species | Zea mays |
transcript | GRMZM2G142334_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAGTGTTGTCAAAGTGGTGATGGATTAAGAGTAGCAACTGGTTCCTACAG CAACATTTTTCGCGTGTTTGGTTGCCGTTCTGGTAGCAGTGAAGCAACAACEST: gi|32826308|gb|CD965986.1|CD965986
genomic: GAGTGTTGTCAAAGTGGTGATGGATTAAGAGTAGCAACTGGTTCCTACAGgtagtctcat ... tgatcttcagCAACATTTTTCGCGTGTTTGGTTGCCGTTCTGGTAGCAGTGAAGCAACAAC
EST: TAAGGGTAGCAACTGGTTCCTACAG CAACATTTTTCGCGTGTTTGGTTGTCGTTCTGGTAGCAGTGAAGCAACAACEST: gi|67016408|gb|CO445157.1|CO445157
genomic: TAAGAGTAGCAACTGGTTCCTACAGgtagtctcat ... tgatcttcagCAACATTTTTCGCGTGTTTGGTTGCCGTTCTGGTAGCAGTGAAGCAACAAC
EST: GAGTGTTGTCAAAGTGGTGATGGATTAAGAGTAGCAACTGGTTCCTACAG CAACATTTTTCGCGTGTTTGGTTGCCGTTCTGGTAGCAGTGAAGCAACAACEST: gi|71417754|gb|DR804198.1|DR804198
genomic: GAGTGTTGTCAAAGTGGTGATGGATTAAGAGTAGCAACTGGTTCCTACAGgtagtctcat ... tgatcttcagCAACATTTTTCGCGTGTTTGGTTGCCGTTCTGGTAGCAGTGAAGCAACAAC
EST: GAGTGTTGTCAAAGTGGTGATGGATTAAGAGTAGCAACTGGTTCCTACAG CAACATTTTTCGCGTGTTTGGTTGCCGTTCTGGTAGCAGTGAAGCAACAACEST: gi|211530906|gb|FL193982.1|FL193982
genomic: GAGTGTTGTCAAAGTGGTGATGGATTAAGAGTAGCAACTGGTTCCTACAGgtagtctcat ... tgatcttcagCAACATTTTTCGCGTGTTTGGTTGCCGTTCTGGTAGCAGTGAAGCAACAAC
EST: CAAAGTGGTGATGGATTAAGAGTAGCAACTGGTTCCTACAG CAACATTTTTSGTGTGTTTGGTTGCSGTTCTGGTAGCAGTGAAGCAACAACEST: gi|211530907|gb|FL193983.1|FL193983
genomic: CAAAGTGGTGATGGATTAAGAGTAGCAACTGGTTCCTACAGgtagtctcat ... tgatcttcagCAACATTTTTCGCGTGTTTGGTTGCCGTTCTGGTAGCAGTGAAGCAACAAC
EST: CAAAGTGGTGATGGATTAAGAGTAGCAACTGGTTCCTACAG CAACATTTTTCGTGTGTTTGGTTGCCGTTCTGGTAGCAGTGAAGCAACAAC
genomic: CAAAGTGGTGATGGATTAAGAGTAGCAACTGGTTCCTACAGgtagtctcat ... tgatcttcagCAACATTTTTCGCGTGTTTGGTTGCCGTTCTGGTAGCAGTGAAGCAACAAC
tgtaatacagcttggctccattaacaggaactaactagctgtttgtgatcttcagCAACATTTTTCGCGTGTTTGGTTGCCGTTCTGGTAGCAGTGAAGCAACAACACTTGAAGCAACCCGAAACCCTACAAG
aactaac putative branch site (score: 62)
tcttc putative PPT
attaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtctcatatgctcgtccagttgtaatacagcttggctccattaacaggaactaactagctgtttgtgatcttcagCAACATTTTTCGCGTGTTTGGTTGCCGTTCTGGTAGCAGTGAAGCAACAACACTTGAAGCAACCCGAAACCCTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA