1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtaggctgaagtctactggatccatagttcgtcatcttgtctccattttagtaattttggatatttggattaacagtttatttgtggttattcatacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTCAAGAAAAGATGAAATTGAACAAGAAGGAGGTTCAACGCTTTAATCCT
species | Zea mays |
transcript | GRMZM2G140917_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|211402616|gb|FL252144.1|FL252144
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|211145716|gb|FL032440.1|FL032440
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|211144286|gb|FL032428.1|FL032428
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|211144291|gb|FL032433.1|FL032433
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|211145718|gb|FL032442.1|FL032442
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|148966697|gb|EE017760.2|EE017760
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|211144288|gb|FL032430.1|FL032430
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|211145719|gb|FL032443.1|FL032443
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|211144285|gb|FL032427.1|FL032427
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|211142858|gb|FL032419.1|FL032419
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|211145714|gb|FL032438.1|FL032438
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|211145713|gb|FL032437.1|FL032437
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|211145715|gb|FL032439.1|FL032439
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|211144284|gb|FL032426.1|FL032426
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|211144294|gb|FL032436.1|FL032436
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|211144287|gb|FL032429.1|FL032429
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|211145717|gb|FL032441.1|FL032441
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|211144283|gb|FL032425.1|FL032425
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|211142856|gb|FL032417.1|FL032417
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|211144292|gb|FL032434.1|FL032434
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|211144280|gb|FL032422.1|FL032422
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|211142860|gb|FL032421.1|FL032421
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|211144290|gb|FL032432.1|FL032432
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|211142857|gb|FL032418.1|FL032418
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|211142859|gb|FL032420.1|FL032420
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTEST: gi|211144282|gb|FL032424.1|FL032424
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
EST: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAG GAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
genomic: ATATTGCCACAGTATTCTTTCGTCAGTCAACCACAGCAAGTGAAGCAAAGgtaggctgaa ... tacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTT
agtaattttggatatttggattaacagtttatttgtggttattcatacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTCAAGAAAAGATGAAATTGAACAAGAAGGAGGTTCAACGCTTTAATCCT
gattaac putative branch site (score: 211)
ttattcatacttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggctgaagtctactggatccatagttcgtcatcttgtctccattttagtaattttggatatttggattaacagtttatttgtggttattcatacttattagGAGAACATAAAAACACTTAATGACCAAAGAGAGAGAAATGTCAAAGCTCTTCAAGAAAAGATGAAATTGAACAAGAAGGAGGTTCAACGCTTTAATCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG