1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttagggagttctttattttgtgcatacgtatccttaatgcctacttatgaccgattgctgagtctgaattctatctgtgtggttagGTGAAAACGGTCGATGAGATGAGGGAGAGGCTGAGGATGCGTGGTCTCCGGTGCCACATCATGTACTGCAGGAACTCGACAAGGCTTCAGGTTGTCCCTC
species | Zea mays |
transcript | GRMZM2G140107_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CGTCTAGTAATGCACACTGCTTCACGTTCCTTATCAAAGATCCCAAAAAG GTGAAAACGGTCGATGAGATGAGGGAGAGGCTGAGGATGCGTGGTCTCCGGEST: gi|67022400|gb|CO451149.1|CO451149
genomic: CGTCTAGTAATGCACACTGCTTCACGTTCCTTATCAAAGATCCCAAAAAGgttagggagt ... gtgtggttagGTGAAAACGGTCGATGAGATGAGGGAGAGGCTGAGGATGCGTGGTCTCCGG
EST: CGTCTAGTAATGCACACTGCTTCACGTTCCTTATCAAAGATCCCAAAAAG GTGAAAACGGTCGATGAGATGAGGGAGAGGCTGAGGATGCGTGGTCTCCGGEST: gi|50327554|gb|CO522680.1|CO522680
genomic: CGTCTAGTAATGCACACTGCTTCACGTTCCTTATCAAAGATCCCAAAAAGgttagggagt ... gtgtggttagGTGAAAACGGTCGATGAGATGAGGGAGAGGCTGAGGATGCGTGGTCTCCGG
EST: CGTCTAGTAATGCACACTGCTTCACGTTCCTTATCAAAGATCCCAAAAAG GTGAAAACGGTCGATGAGATGAGGGAGAGGCTGAGGATGCGTGGTEST: gi|50327553|gb|CO522679.1|CO522679
genomic: CGTCTAGTAATGCACACTGCTTCACGTTCCTTATCAAAGATCCCAAAAAGgttagggagt ... gtgtggttagGTGAAAACGGTCGATGAGATGAGGGAGAGGCTGAGGATGCGTGGT
EST: AGTAATGCACACTGCTTCACGTTCCTTATCAAAGATCCCAAAAAG GTGAAAACGGTCGATGAGATGAGGGAGAGGCTGAGGATGCGTGGTTTCCGG
genomic: AGTAATGCACACTGCTTCACGTTCCTTATCAAAGATCCCAAAAAGgttagggagt ... gtgtggttagGTGAAAACGGTCGATGAGATGAGGGAGAGGCTGAGGATGCGTGGTCTCCGG
ccttaatgcctacttatgaccgattgctgagtctgaattctatctgtgtggttagGTGAAAACGGTCGATGAGATGAGGGAGAGGCTGAGGATGCGTGGTCTCCGGTGCCACATCATGTACTGCAGGAACTCGACAAGGCTTCAGGTTGTCCCTC
ccttaat putative branch site (score: 79)
aattctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagggagttctttattttgtgcatacgtatccttaatgcctacttatgaccgattgctgagtctgaattctatctgtgtggttagGTGAAAACGGTCGATGAGATGAGGGAGAGGCTGAGGATGCGTGGTCTCCGGTGCCACATCATGTACTGCAGGAACTCGACAAGGCTTCAGGTTGTCCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG