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gtatgatataccatttgtatttggatgtcctgtgctatttaaatttctgtattaccaaaaatgtaattttcttctgattgtttcagGGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGCAGGAATCGTCACATCTCTTCAAGCTAGATGCAGTGTTATTGCTGCGGCA
species | Zea mays |
transcript | GRMZM2G139894_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGGGGCATTTGCCTCATTGACGAGTTTGACMAGATGAATGATCAAGATAG GGTAAGTATTCATGAAGCTATGGAGCAACAAAGTATCAGTATATCAAAAGCEST: gi|211174125|gb|FL130962.1|FL130962
genomic: AGGGGCATTTGCCTCATTGATGAGTTTGACAAGATGAATGATCAAGATAGgtatgatata ... attgtttcagGGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGC
EST: AGGGGCATTTGCCTCATTGATGAGTTTGACAAGATGAATGATCAAGATAG GGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGCEST: gi|32932509|gb|CF037321.1|CF037321
genomic: AGGGGCATTTGCCTCATTGATGAGTTTGACAAGATGAATGATCAAGATAGgtatgatata ... attgtttcagGGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGC
EST: AGGGGCATTTGCCTCATTGACGAGTTTGACAAGATGAATGATCAAGATAG GGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGCEST: gi|211172448|gb|FL130949.1|FL130949
genomic: AGGGGCATTTGCCTCATTGATGAGTTTGACAAGATGAATGATCAAGATAGgtatgatata ... attgtttcagGGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGC
EST: AGGGGCATTTGCCTCATTGATGAGTTTGACAAGATGAATGATCAAGATAG GGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGCEST: gi|211174123|gb|FL130960.1|FL130960
genomic: AGGGGCATTTGCCTCATTGATGAGTTTGACAAGATGAATGATCAAGATAGgtatgatata ... attgtttcagGGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGC
EST: AGGGGCATTTGCCTCATTGATGAGTTTGACAAGATGAATGATCAAGATAG GGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGCEST: gi|211174124|gb|FL130961.1|FL130961
genomic: AGGGGCATTTGCCTCATTGATGAGTTTGACAAGATGAATGATCAAGATAGgtatgatata ... attgtttcagGGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGC
EST: AGGGGCATTTGCCTCATTGATGAGTTTGACAAGATGAATGATCAAGATAG GGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGCEST: gi|211172450|gb|FL130951.1|FL130951
genomic: AGGGGCATTTGCCTCATTGATGAGTTTGACAAGATGAATGATCAAGATAGgtatgatata ... attgtttcagGGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGC
EST: AGGGGCATTTGCCTCATTGATGAGTTTGACAAGATGAATGATCAAGATAG GGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGCEST: gi|32943927|gb|CF048746.1|CF048746
genomic: AGGGGCATTTGCCTCATTGATGAGTTTGACAAGATGAATGATCAAGATAGgtatgatata ... attgtttcagGGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGC
EST: GAATGATCAAGATAG GGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGCEST: gi|30306555|gb|CD001228.1|CD001228
genomic: GAATGATCAAGATAGgtatgatata ... attgtttcagGGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGC
EST: AGGGGCATTTGCCTCATTGATGAGTTTGACAAGATGAATGATCAAGATAG GGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGCEST: gi|29544563|gb|CB604943.1|CB604943
genomic: AGGGGCATTTGCCTCATTGATGAGTTTGACAAGATGAATGATCAAGATAGgtatgatata ... attgtttcagGGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGC
EST: AGGGGCATTTGCCTCATTGATGAGTTTGACAAGATGAATGATCAAGATAG GGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGCEST: gi|211174122|gb|FL130959.1|FL130959
genomic: AGGGGCATTTGCCTCATTGATGAGTTTGACAAGATGAATGATCAAGATAGgtatgatata ... attgtttcagGGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGC
EST: AGGGGCATTTGCCTCATTGATGAGTTTGACAAGATGAATGATCAAGATAG GGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGCEST: gi|29544433|gb|CB604813.1|CB604813
genomic: AGGGGCATTTGCCTCATTGATGAGTTTGACAAGATGAATGATCAAGATAGgtatgatata ... attgtttcagGGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGC
EST: AGGGGCATTTGCCTCATTGATGAGTTTGACAAGATGAATGATCAAGATAG GGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGC
genomic: AGGGGCATTTGCCTCATTGATGAGTTTGACAAGATGAATGATCAAGATAGgtatgatata ... attgtttcagGGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGC
gtgctatttaaatttctgtattaccaaaaatgtaattttcttctgattgtttcagGGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGCAGGAATCGTCACATCTCTTCAAGCTAGATGCAGTGTTATTGCTGCGGCA
ttctgat putative branch site (score: 3)
ttgtttc CT-rich tract
atttaaatttctgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatataccatttgtatttggatgtcctgtgctatttaaatttctgtattaccaaaaatgtaattttcttctgattgtttcagGGTAAGTATTCATGAAGCTATGGAGCAACAGAGTATCAGTATATCAAAAGCAGGAATCGTCACATCTCTTCAAGCTAGATGCAGTGTTATTGCTGCGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC