1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...aacttcagctggaagaaacacaaatgtgttgtcttgaagcaatattaattgtgatgctatacagtttgaatcacttacttgatgggtatattgttatcagAGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAG
species | Zea mays |
transcript | GRMZM2G135283_T03 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGTTAAATTTGCGCAG AGCCTGATTTCAAAAGGATATGAACTCGTTTCTGGTGGGACTGACAACCATEST: gi|67042253|gb|CO468508.1|CO468508
genomic: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAGgtatttgtgt ... ttgttatcagAGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAG AGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCATEST: gi|6194529|gb|AW146633.1|AW146633
genomic: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAGgtatttgtgt ... ttgttatcagAGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAG AGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCATEST: gi|108953686|gb|EC364842.1|EC364842
genomic: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAGgtatttgtgt ... ttgttatcagAGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCAT
EST: AGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAG AGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCATEST: gi|71299009|gb|DR785497.1|DR785497
genomic: AGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAGgtatttgtgt ... ttgttatcagAGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAG AGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCATEST: gi|60354435|gb|DN221408.1|DN221408
genomic: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAGgtatttgtgt ... ttgttatcagAGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAG AGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCATEST: gi|60343439|gb|DN210412.1|DN210412
genomic: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAGgtatttgtgt ... ttgttatcagAGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAG AGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCATEST: gi|40336482|gb|CK370552.1|CK370552
genomic: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAGgtatttgtgt ... ttgttatcagAGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAG AGCCTGATTTCAAAAGGATATGAACTCGTCTCCGGTGGGACTGACAACCATEST: gi|113700941|gb|EE678445.1|EE678445
genomic: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAGgtatttgtgt ... ttgttatcagAGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCAT
EST: CAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAG AGCCTGATTTCAAAAGGATATGAACTCGTCTCCGGTGGGACTGACAACCATEST: gi|6102053|gb|AW126523.1|AW126523
genomic: CAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAGgtatttgtgt ... ttgttatcagAGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAG AGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCATEST: gi|67013913|gb|CO442662.1|CO442662
genomic: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAGgtatttgtgt ... ttgttatcagAGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAG AGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCATEST: gi|37393418|gb|CF633973.1|CF633973
genomic: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAGgtatttgtgt ... ttgttatcagAGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAG AGCCTGATTTCAAAAGGATATGAACTCGTCTCCGGTGGGACTGACAACCATEST: gi|166685188|gb|EG257794.1|EG257794
genomic: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAGgtatttgtgt ... ttgttatcagAGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAG AGCCTGATTTCAAAAGGATATGAACTCGTCTCCGGTGGGACTGACEST: gi|60397906|gb|DN230722.1|DN230722
genomic: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAGgtatttgtgt ... ttgttatcagAGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGAC
EST: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAG AGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCATEST: gi|14204327|gb|BG838004.1|BG838004
genomic: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAGgtatttgtgt ... ttgttatcagAGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAG AGCCTGATTTCAAAAGGATATGAACTCGTCTCCGGTGGGACTGACAACCATEST: gi|60351519|gb|DN218492.1|DN218492
genomic: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAGgtatttgtgt ... ttgttatcagAGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTTAATTTGCGCAG AGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACEST: gi|67024112|gb|CO452861.1|CO452861
genomic: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAGgtatttgtgt ... ttgttatcagAGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGAC
EST: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAG AGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCATEST: gi|60357206|gb|DN224179.1|DN224179
genomic: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAGgtatttgtgt ... ttgttatcagAGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAG AGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCATEST: gi|60353152|gb|DN220125.1|DN220125
genomic: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAGgtatttgtgt ... ttgttatcagAGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCAT
EST: GTAATTGTGCTAAATTTGCGCAG AGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCATEST: gi|60349820|gb|DN216793.1|DN216793
genomic: GTAATTGTGCTAAATTTGCGCAGgtatttgtgt ... ttgttatcagAGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCAT
EST: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAG AGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCAT
genomic: ACAGAGCTTACCAAGAGCAAGTTATCAGTAATTGTGCTAAATTTGCGCAGgtatttgtgt ... ttgttatcagAGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCAT
taattgtgatgctatacagtttgaatcacttacttgatgggtatattgttatcagAGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAG
tatattgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacttcagctggaagaaacacaaatgtgttgtcttgaagcaatattaattgtgatgctatacagtttgaatcacttacttgatgggtatattgttatcagAGCCTGATTTCAAAAGGATATGAACTCGTCTCTGGTGGGACTGACAACCATTTAGTTCTGGTGAATCTCAAGAATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG