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...cttgatctttgaatgaagaactgatgatatctgccatctcaagtgttcttgtacgagttgttgagtatgacgtatatactaactattatgttgataatagGTGAAAACGTTCCCTGTGATCCTATTGCCCAAGGAGAAGCTTGTTGACACCAACGGCGCAG
species | Zea mays |
transcript | GRMZM2G135132_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGTGATTACTCAAGGCGCTGATCCAGTGGTTGTTGCTGAGGATGGGAAG GTGAAAACGTTCCCTGTGATCCTATTGCCCAAGGAGAAGCTTGTTGACACCEST: gi|60340226|gb|DN207199.1|DN207199
genomic: CTGTGATTACTCAAGGTGCTGATCCAGTGGTTGTTGCTGAGGACGGGAAGgtatatatac ... ttgataatagGTGAAAACGTTCCCTGTGATCCTATTGCCCAAGGAGAAGCTTGTTGACACC
EST: CTGTGATTACTCAAGGTGCTGATCCAGTGGTTGTTGCTGAGGACGGGAAG GTGAAAACGTTCCCTGTGATCCTATTGCCCAAGGAGAAGCTTGTTGACACCEST: gi|211259748|gb|FL311234.1|FL311234
genomic: CTGTGATTACTCAAGGTGCTGATCCAGTGGTTGTTGCTGAGGACGGGAAGgtatatatac ... ttgataatagGTGAAAACGTTCCCTGTGATCCTATTGCCCAAGGAGAAGCTTGTTGACACC
EST: CTGTGATTACTCAAGGTGCTGATCCAGTGGTTGTTGCTGAGGACGGGAAG GTGAAAACGTTCCCTGTGATCCTATTGCCCAAGGAGAAGCTTGTTGACACCEST: gi|60355835|gb|DN222808.1|DN222808
genomic: CTGTGATTACTCAAGGTGCTGATCCAGTGGTTGTTGCTGAGGACGGGAAGgtatatatac ... ttgataatagGTGAAAACGTTCCCTGTGATCCTATTGCCCAAGGAGAAGCTTGTTGACACC
EST: CTGTGATTACTCAAGGTGCTGATCCAGTGGTTGTTGCTGAGGACGGGAAG GTGAAAACGTTCCCTGTGATCCTATTGCCCAAGGAGAAGCTTGTTGACACCEST: gi|14243818|gb|BG841519.2|BG841519
genomic: CTGTGATTACTCAAGGTGCTGATCCAGTGGTTGTTGCTGAGGACGGGAAGgtatatatac ... ttgataatagGTGAAAACGTTCCCTGTGATCCTATTGCCCAAGGAGAAGCTTGTTGACACC
EST: CTGTGATTACTCAAGGTGCTGATCCAGTGGTTGTTGCTGAGGACGGGAAG GTGAAAACGTTCCCTGTGATCCTATTGCCCAAGGAGAAGCTTGTTGACACCEST: gi|60337076|gb|DN204049.1|DN204049
genomic: CTGTGATTACTCAAGGTGCTGATCCAGTGGTTGTTGCTGAGGACGGGAAGgtatatatac ... ttgataatagGTGAAAACGTTCCCTGTGATCCTATTGCCCAAGGAGAAGCTTGTTGACACC
EST: CTGTGATTACTCAAGGTGCTGATCCAGTGGTTGTTGCTGAGGACGGGAAG GTGAAAACGTTCCCTGTGATCCTATTGCCCAAGGAGAAGCTTGTTGACACCEST: gi|60395531|gb|DN228401.1|DN228401
genomic: CTGTGATTACTCAAGGTGCTGATCCAGTGGTTGTTGCTGAGGACGGGAAGgtatatatac ... ttgataatagGTGAAAACGTTCCCTGTGATCCTATTGCCCAAGGAGAAGCTTGTTGACACC
EST: CTGTGATTACTCAAGGTGCTGATCCAGTGGTTGTTGCTGAGGACGGGAAG GTGAAAACGTTCCCTGTGATCCTATTGCCCAAGGAGAAGCTTGTTGACACC
genomic: CTGTGATTACTCAAGGTGCTGATCCAGTGGTTGTTGCTGAGGACGGGAAGgtatatatac ... ttgataatagGTGAAAACGTTCCCTGTGATCCTATTGCCCAAGGAGAAGCTTGTTGACACC
ttcttgtacgagttgttgagtatgacgtatatactaactattatgttgataatagGTGAAAACGTTCCCTGTGATCCTATTGCCCAAGGAGAAGCTTGTTGACACCAACGGCGCAG
tatatactaactatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgatctttgaatgaagaactgatgatatctgccatctcaagtgttcttgtacgagttgttgagtatgacgtatatactaactattatgttgataatagGTGAAAACGTTCCCTGTGATCCTATTGCCCAAGGAGAAGCTTGTTGACACCAACGGCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - ttgaatg
- - - - - - - - - - -tgatgat
- - - - - - - - - - - - - - -tctgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttga