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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaatactgccgtttcttttttaagcatttcaaactgtagttcctgatccagcaattgaataacagCTAGGACTTGACCAACGGGAACATGATGATCCTACCCCATACTTATTGGCCATATGGACACCAG

Basic information

species Zea mays
transcript GRMZM2G131756_T02
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G131756_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os05g37410.1 (Oryza sativa), 3'ss of exon 15
----------gtgaaatactgccgtttcttttttaagcatttcaaactgtagttcctgatccagcaattgaa-taacagCTAGGACTTGACCAACGGGAACATGATGATCCTACCCCATACTTATTGGCCATATGGACACCAG
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gtgagaccatgagaaattgtgccatctttctttaaaacacttcaagatattatttctgatt--gcaaatgatcttacagCTAGCACTCGACCAACGGGAGCCTGATGATCCAAGTCCTTACCTGTTGGCCATATGGACACCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32945243|gb|CF050062.1|CF050062
EST:     GTATGAGCTTCCAGATGCACATCCACTTTTACAACAG                         CTAGGACTTGACCAACGGGAACATGATGATCCTACCCCATACTTATTGGCC
genomic: GTATGAGCTTCCAGATGCACATCCACTTTTACAACAGgtgaaatact ... tgaataacagCTAGGACTTGACCAACGGGAACATGATGATCCTACCCCATACTTATTGGCC
EST: gi|211540330|gb|FL320588.1|FL320588
EST:     GTATGAGCTTCCAGATGCACATCCACTTTTACAACAG                         CTAGGACTTGACCAACGGGAACATGATGATCCTACCCCATACTTATTGGCC
genomic: GTATGAGCTTCCAGATGCACATCCACTTTTACAACAGgtgaaatact ... tgaataacagCTAGGACTTGACCAACGGGAACATGATGATCCTACCCCATACTTATTGGCC
EST: gi|9952695|gb|BE639158.1|BE639158
EST:     GTATGAGCTTCCAGATGCACATCCACTTTTACAACAG                         CTAGGACTTGACCAACGGGAACATGATGATCCTACCCCATACTTATTGGCC
genomic: GTATGAGCTTCCAGATGCACATCCACTTTTACAACAGgtgaaatact ... tgaataacagCTAGGACTTGACCAACGGGAACATGATGATCCTACCCCATACTTATTGGCC
EST: gi|60339031|gb|DN206004.1|DN206004
EST:     GTATGAGCTTCCAGATGCACATCCACTTTTACAACAG                         CTAGGACTTGACCAACGGGAACATGATGATCCTACCCCATACTTATTGGCC
genomic: GTATGAGCTTCCAGATGCACATCCACTTTTACAACAGgtgaaatact ... tgaataacagCTAGGACTTGACCAACGGGAACATGATGATCCTACCCCATACTTATTGGCC
EST: gi|5901234|gb|AW042334.1|AW042334
EST:     CAGATGCACATCCACTTTTACAACAG                         CTAGGACTTGACCAACGGGAACATGATGATCCTACCCCATACTTATTGGCC
genomic: CAGATGCACATCCACTTTTACAACAGgtgaaatact ... tgaataacagCTAGGACTTGACCAACGGGAACATGATGATCCTACCCCATACTTATTGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttcttttttaagcatttcaaactgtagttcctgatccagcaattgaataacagCTAGGACTTGACCAACGGGAACATGATGATCCTACCCCATACTTATTGGCCATATGGACACCAG
                              tcctgat  putative branch site (score: 3)
 ttttttaagcattt  TA-rich tract