Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccagaatttgatggatttattcttctccaatgatctttgttggtccatattaatttcatttgctgaaatattatgactaataatttgcacattttgacagCCTGTGCATAAATGGATTGTTCGTCATATATATTTCCCTTGCATGCGAAATGGTATATCAAAG

Basic information

species Zea mays
transcript GRMZM2G130749_T01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130749_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os05g10810.1 (Oryza sativa), 3'ss of exon 11
-------ccagaatt-tgatggatttattcttctccaatgatctttgttggtccatattaatttcatttgctgaaatattatgactaataatttgcacattttgacagCCTGTGCATAAATGGATTGTTCGTCATATATATTTCCCTTGCATGCGAAATGGTATATCAAAG
       | |  ||| |||||||| |||| |  | |  |  ||||  |||     | ||  ||| |        ||||| || | ||||   ||||   |||| ||||||||| ||||||||| ||||||| ||||| || || |||||||||||||||||||||||||||
gaaaatacaattattgtgatggatatattatgttacgcttctcttgtttgtatgttgttgttttgacc------aatatgatcattaatg--ttgccttttttcacagCCTGTACATAAATGGGTTGTTCGCCATATTTACTTTCCTTGCATGCGAAATGGTATATCAAAG

upper sequence: GRMZM2G130749_T02 (Zea mays), 3'ss of exon 11
lower sequence: AT2G19450.1 (Arabidopsis thaliana), 3'ss of exon 11
ccagaatttgatggatttattcttctccaatgatctttgttggtccatattaatttcatttgctgaaatattatgactaataatttgcacattttgacagCCTGTGCATAAATGGATTGTTCGTCATATATATTTCCCTTGCATGCGAAATGGTATATCAAAG
          |||| | | ||| |   || | | |||  || || || |  |       | |  |||      | | ||| |  |||      |||||||||||| ||||||||||| ||||| |||||||| ||||| ||| |||| |     ||| |||||
--------gtatggttctcttcctaaaca-tcaccttcttttgtacacaaaa-------tagaagaagagagctaattaagatcttgttttccttgacagCCTGTTCATAAATGGATGGTTCGACATATATACTTCCCGTGCTTGCGCAGCAAGATACCAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88756047|gb|DY540188.1|DY540188
EST:     TGAGTACTGGAGAAAATGGAACATG                         CCTGTGCATAAATGGATTGTTCGTCATATATATTTCCCTTGCATGCGAAAT
genomic: TGAGTACTGGAGAAAATGGAACATGgtatgccttt ... attttgacagCCTGTGCATAAATGGATTGTTCGTCATATATATTTCCCTTGCATGCGAAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catattaatttcatttgctgaaatattatgactaataatttgcacattttgacagCCTGTGCATAAATGGATTGTTCGTCATATATATTTCCCTTGCATGCGAAATGGTATATCAAAG
                             gactaat  putative branch site (score: 2)
                  tgaaatattatgacta  TA-rich tract