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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcatatagttcaatattatgtttttttgtattttttacctgttctaatttctacaattgagaaccactgtgcctaatatccatgaggtttgtgtttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGCAGTTCTATATTTACAAAGAGGCCAGATATTATTTTTAAGTGGCTCGG

Basic information

species Zea mays
transcript GRMZM2G130440_T02
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130440_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os09g26880.3 (Oryza sativa), 3'ss of exon 11
gtagcatatagttcaatattatgtttttttgt-----attttt--tacctgttctaatttctacaattgagaaccactgtgcc-taatatccatgaggttt-gtg----tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGCAGTTCTATATTTACAAAGAGGCCAGATATTATTTTTAAGTGGCTCGG
|||  | | | |  | || | || |||| |||     || | |  |   || | | | || || | |   | ||||        | || | ||  |  ||| |||    || ||| |||    ||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| | ||
gtataaaagattcaattactttgcttttatgttattgatctgtaatgtttggtgtcagttgtatagtgttggaccagatcattatcatttacactacttttcgtggtcattacctgcagAATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67020548|gb|CO449297.1|CO449297
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGCTGTGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|60347398|gb|DN214371.1|DN214371
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|9255155|gb|BE345623.1|BE345623
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|16377835|gb|BI992138.1|BI992138
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|14204228|gb|BG837905.1|BG837905
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGCTGTGAAATTTCAG                         ACCTTGAAGGAGAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAG
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGA-AGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAG
EST: gi|32922323|gb|CF027135.1|CF027135
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGCTGTGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|67026257|gb|CO455006.1|CO455006
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGCTGTGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|32922524|gb|CF027336.1|CF027336
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGCTGTGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|32915097|gb|CF019909.1|CF019909
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|32828369|gb|CD968047.1|CD968047
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|32936004|gb|CF040816.1|CF040816
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|32923501|gb|CF028313.1|CF028313
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGCTGTGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|32923132|gb|CF027944.1|CF027944
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGCTGTGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|32868260|gb|CF007942.1|CF007942
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|6828017|gb|AW331660.1|AW331660
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGCTATGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|60397385|gb|DN230201.1|DN230201
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGCTATGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|166649106|gb|EG057457.1|EG057457
EST:     GAAGAACTCTTTGGTCCTGTCCTTTANGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: GAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|4647186|gb|AI622261.1|AI622261
EST:     GTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: GTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|60350203|gb|DN217176.1|DN217176
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|32923147|gb|CF027959.1|CF027959
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGCTGTGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|149059482|gb|EE156966.2|EE156966
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|211261857|gb|FL408778.1|FL408778
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGCTATGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|148962666|gb|EE013565.2|EE013565
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTTTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|32923528|gb|CF028340.1|CF028340
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGCTGTGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|78081605|gb|DV510017.1|DV510017
EST:     ATGTTATGAAATTTCAG                         TCCTGGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: ATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|6536574|gb|AW224887.1|AW224887
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGCTATGAAATTTCAG                         ACCTTGAAGGAAGCA
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCA
EST: gi|32833586|gb|CD973264.1|CD973264
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|32844476|gb|CD984157.1|CD984157
EST:     CTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         ACCTTGAAGGAAGCACTTGAAATCAATAACTCTGCTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|32868259|gb|CF007941.1|CF007941
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|211229233|gb|FL464290.1|FL464290
EST:     TCCTTTATGCTATGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCTTCAAGGATTGAGC
genomic: TCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|7844212|gb|AW787434.1|AW787434
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|33099261|gb|CF059221.1|CF059221
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|60354799|gb|DN221772.1|DN221772
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|88748631|gb|DY532772.1|DY532772
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|148935116|gb|EC879156.2|EC879156
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTGGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|32844203|gb|CD983884.1|CD983884
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|5895823|gb|AW037069.1|AW037069
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|60350447|gb|DN217420.1|DN217420
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|71767768|gb|DR965705.1|DR965705
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|32845522|gb|CD985203.1|CD985203
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAGACTGCAG                         ACCTTGAAGGAAGCAATTGAAATCCACAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|32828428|gb|CD968106.1|CD968106
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|32844902|gb|CD984583.1|CD984583
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         CCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|32923608|gb|CF028420.1|CF028420
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGCTGTGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|32922556|gb|CF027368.1|CF027368
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGCTGTGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|61236938|gb|DN586642.1|DN586642
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGCTATGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|149110788|gb|EE294304.2|EE294304
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|32857077|gb|CD996758.1|CD996758
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|67034827|gb|CO463360.1|CO463360
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGCTGTGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|211149006|gb|FL413135.1|FL413135
EST:     AACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: AACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|7844210|gb|AW787432.1|AW787432
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|149021322|gb|EE154443.2|EE154443
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|7844211|gb|AW787433.1|AW787433
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|60346376|gb|DN213349.1|DN213349
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|67026004|gb|CO454753.1|CO454753
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGCTGTGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|211441965|gb|FL416336.1|FL416336
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGCTATGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|213168098|gb|FM193492.1|FM193492
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|149076635|gb|EE165274.2|EE165274
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|6056852|gb|AW091257.1|AW091257
EST:     CTGT-CTTTATG-TATG-AATTTCAG                         TCC-TGAA-GAAGCAATTGAAATCAAT-ACTCTGTTCCTCAAGGATTGAGC
genomic: CTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|32835746|gb|CD975424.1|CD975424
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|110528718|gb|EE032902.1|EE032902
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTGGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|37396775|gb|CF635681.1|CF635681
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|148982783|gb|EE028612.2|EE028612
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|32922276|gb|CF027088.1|CF027088
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGCTGTGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|32923568|gb|CF028380.1|CF028380
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGCTGTGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|148935241|gb|EC879278.2|EC879278
EST:     TTG-GAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCTTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|149097408|gb|EE183262.2|EE183262
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTTTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|32923279|gb|CF028091.1|CF028091
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGCTGTGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|111193977|gb|EE292113.1|EE292113
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|33099158|gb|CF059118.1|CF059118
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         ACCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
EST: gi|149008574|gb|EE040752.2|EE040752
EST:     TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAG                         TCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC
genomic: TTGTGAAAGAAGAACTCTTTGGTCCTGTCCTTTATGTTATGAAATTTCAGgtagcatata ... tttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctacaattgagaaccactgtgcctaatatccatgaggtttgtgtttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGCAGTTCTATATTTACAAAGAGGCCAGATATTATTTTTAAGTGGCTCGG
                      gcctaat  putative branch site (score: 3)
                                           tgtttcct  putative PPT
                         taatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtagcatatagttcaatattatgtttttttgtattttttacctgttctaatttctacaattgagaaccactgtgcctaatatccatgaggtttgtgtttcctacagTCCTTGAAGGAAGCAATTGAAATCAATAACTCTGTTCCTCAAGGATTGAGCAGTTCTATATTTACAAAGAGGCCAGATATTATTTTTAAGTGGCTCGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG