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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatcttcacccacatgacagtatctgtacatattgtagttgaaatggatataattgaaatacttgctctctgtttttttcattcaatgtgccttttctcaaccataatatctttactttctgtatcaaccttctaatattcatgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAGAAGTTCGGGTGCAATTCAAGGATGTCCCTGGTGACATTTTTAGAA

Basic information

species Zea mays
transcript GRMZM2G130230_T03
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130230_T03 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os04g40874.1 (Oryza sativa), 3'ss of exon 10
gtatatcttcacccacatgacagtatctgtacatattgtagttgaaatggatataattgaaatacttgctctctgtttttttcattcaatgtgccttttc-tcaaccataatatctttactttctgtatcaaccttctaatattcatgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAGAAGTTCGGGTGCAATTCAAGGATGTCCCTGGTGACATTTTTAGAA
|||| |||       |||  |||||| | |||| |||   |||    |||| |      | ||   || | |  |||||     ||||   || ||||   |  |||||||| |||| | |||       |||  | ||||||||||    ||||||||||||||||||||||||||||||||||||| | || |||| |||||||||||| || ||||| ||||| ||||| ||||||||||| |||| | 
gtatgtctct-----cat--cagtatatatacacattagggttc---tggagaaggacaacat---tgattttcgttttccc--ttcagattgtctttcagtggaccataat-tcttcatttt-------aactctgtaatattcatatcctgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCACTAAGCTCAAGGAAAGCAGAAGTCCGTGTGCAGTTCAAAGATGTTCCTGGTGACATCTTTAAAT

upper sequence: GRMZM2G130230_T03 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA16G06850.3 (Glycine max), 3'ss of exon 11
gtatatcttcacccacatgacagtatctgtacatattgtagttgaaatggatata-attgaaa-tacttgctctctgtttttttcattcaatgtgccttttc--tcaaccataatatctttactttctgtatcaaccttcta-atattcatgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAGAAGTTCGGGTGCAATTCAAGGATGTCCCTGGTGACATTTTTAGAA
             || |||| | | | || |||| |  |   | |||   ||| | | ||||  | | |    | | |||  | ||   | |  |    | |  |    |||| |   | |  |  ||  |  ||   | || |||||  |  | | |||||||||||||||| || ||||| || || ||| | | ||| |  || |||||  |  |||| ||||||||||||||||||||||| ||||| |   
-----------gtcagatga-aatgt-tgaacatttccttcctaaaagaaataaatactgaagcttcctttaatttctttggtgcaaaaattaggaaaatacagtagttcatattcattctggtgcctaaaagaagtatatatatattttttgtat-cagGTGTTCCTTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAGAGATAAGGGTTCAATTCAAGGATGTCCCTGGTGATATTTTCAAGT

upper sequence: GRMZM2G130230_T03 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA19G24250.1 (Glycine max), 3'ss of exon 11
gtatatcttcacccacatgacagtatctgtacatattgtagttgaaatggatataattgaaatacttgctctctgtttttttcattcaatgtgccttttctcaaccataatatctttactttctgtatcaaccttctaatattcatgctttg----cagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAGAAGTTCGGGTGCAATTCAAGGATGTCCCTGGTGACATTTTTAGAA
             || |||| | | | |   ||| |  |   | |||  || || | |     |  | |  |   ||| |||  | |||       ||    ||  | | ||  |    ||  |       |||  ||  |||  |  ||||    |||||||||| ||||| || ||||| || || ||| | | ||| |  || |||||  |  |||| ||||||||||||||||||||||| ||||| |   
-----------gtcagatga-aatgt-taagcatttccttcctaaaa--gaaatgaatactggagcttcctttaatttctttggtgcaaaaaa---ttaggaaaataaagtagttcatattcattctggtgcctaatagaattttttttttggtatcagGTGTTCCGTTCATACTAAAAGCAGGGAAGGCACTAAATTCTAGAAAGGCAGAGATCAGGGTTCAATTCAAGGATGTCCCTGGTGATATTTTCAAGT

upper sequence: GRMZM2G130230_T03 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA19G22690.1 (Glycine max), 3'ss of exon 11
gtatatcttcacccacatgacagtatctgtacatattgtagttgaaatggatataattgaaatacttgctctctgttttttt-cattcaatgtgccttttctcaaccataatatctttactttctgtatcaaccttctaatattcatgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAGAAGTTCGGGTGCAATTCAAGGATGTCCCTGGTGACATTTTTAGAA
                                          |    || ||    ||| | |   |||| | | ||| | | ||||  ||        |  ||| |  || || || ||       | |  | |||| || ||          ||||||||||||||| || || ||||| || || || | ||| |  || |||||  | ||||| |||||||||||||| |||||||| |||||||   
------------------------------------------ttgtgtgtattattttgtattttatgctatatatttctgtgcatttgatcaattaaattgcaatcgaaacattttcacac----cagctcctttctgatgtt----------agGTGTTCCTTTCATACTAAAGGCTGGGAAGGCCTTAAATTCGAGAAAGGCAGACATACGGGTTCAATTCAAGGATGTTCCTGGTGATATTTTTAAGT

upper sequence: GRMZM2G130230_T03 (Zea mays), 3'ss of exon 11
lower sequence: Vv14s0171g00490.t01 (Vitis vinifera), 3'ss of exon 11
gtatatcttcacccacatgacagtatctgtacatattgtagttgaaatggatataattgaaatacttgctctctgtttttttcattcaatgtgccttttctcaaccataatatctttactttctgtatcaaccttctaatattcatgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAGAAGTTCGGGTGCAATTCAAGGATGTCCCTGGTGACATTTTTAGAA
                                                        |   |||  ||| | | |   || | ||||  ||         |   |||| |       |  | ||   | |||     |||||||  | |||||||||||||||||| || |||||||| || |||||| | | ||||| ||| |||||| ||||  | |||||||||||||| |||||||| || |  ||| 
-----------------------------------------------------agttcccaatgattgttttattcgttatgcattggattactgagagcattaccagatccaacctcttctcacaaccaatgccataatatt--ttctttgcagGTGTTCCTTTTATACTTAAAGCAGGGAAAGCACTAAATTCAAGGAAGGCAGAAATTCGCATTCAATTCAAGGATGTTCCTGGTGATATCTACAGAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18165893|gb|BM335732.1|BM335732
EST:     GGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTANAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: GGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|16922529|gb|BM075613.1|BM075613
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|18168981|gb|BM338821.1|BM338821
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|16920887|gb|BM074878.1|BM074878
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|211002848|gb|FL384087.1|FL384087
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|18171197|gb|BM341037.1|BM341037
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTANAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|18172923|gb|BM348311.1|BM348311
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTANAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|28985370|gb|CB350607.1|CB350607
EST:     AAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAG-TCAAAAGAAAGCA
genomic: AAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTC-AAAGAAAGCA
EST: gi|18162461|gb|BM332300.1|BM332300
EST:     CTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTANAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|18172314|gb|BM347702.1|BM347702
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|18165995|gb|BM335834.1|BM335834
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|211483716|gb|FL115161.1|FL115161
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|18174512|gb|BM349900.1|BM349900
EST:     CGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|67037531|gb|CO464345.1|CO464345
EST:     TCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|28986016|gb|CB350927.1|CB350927
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|74237091|gb|DT645005.1|DT645005
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|6194863|gb|AW146967.1|AW146967
EST:     TCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|18167519|gb|BM337358.1|BM337358
EST:     TGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: TGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|211483712|gb|FL115157.1|FL115157
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|211483710|gb|FL115155.1|FL115155
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|18163622|gb|BM333461.1|BM333461
EST:     TACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTANAGCATTGAGTTCAAAGAAAGCAG
genomic: TACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|71757950|gb|DR955887.1|DR955887
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|6020578|gb|AW065611.1|AW065611
EST:     TCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: TCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|71449884|gb|DR830934.1|DR830934
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|211529383|gb|FL468953.1|FL468953
EST:     TCCAACTTTTGCATCTG-TGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|28986008|gb|CB350923.1|CB350923
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGCAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTATAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|18170373|gb|BM340213.1|BM340213
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|60357201|gb|DN224174.1|DN224174
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|78083438|gb|DV511831.1|DV511831
EST:     AAGATGAGAAG                         GGGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: AAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|211483711|gb|FL115156.1|FL115156
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|89757408|gb|DY687023.1|DY687023
EST:     CGGGTACACAATGAAAGATGGGAAG                         GTGTCCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|16920409|gb|BM074643.1|BM074643
EST:     CCCAACTTTTGCATCTG-TGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGT-AAGCCATTGAGTTCAAAGAAAGCA
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAG-CATTGAGTTCAAAGAAAGCA
EST: gi|211483713|gb|FL115158.1|FL115158
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|18173363|gb|BM348751.1|BM348751
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|18171055|gb|BM340895.1|BM340895
EST:     TGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTANAGCATTGAGTTCAAAGAAAGCAG
genomic: TGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|18170269|gb|BM340109.1|BM340109
EST:     CGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTANAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|17930457|gb|BM267417.1|BM267417
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|211483714|gb|FL115159.1|FL115159
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|89759525|gb|DY688326.1|DY688326
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|18167594|gb|BM337434.1|BM337434
EST:     AATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: AATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|18163107|gb|BM332946.1|BM332946
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|18171556|gb|BM341396.1|BM341396
EST:     CTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|37424885|gb|CF650176.1|CF650176
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|18164988|gb|BM334827.1|BM334827
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|33103286|gb|CF063246.1|CF063246
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAGGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|86473854|gb|DY240224.1|DY240224
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|78021317|gb|DV489704.1|DV489704
EST:     GGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: GGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|18660007|gb|BM500637.1|BM500637
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|113701618|gb|EE679122.1|EE679122
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|18174086|gb|BM349474.1|BM349474
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTANAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAG
EST: gi|16923088|gb|BM076080.1|BM076080
EST:     CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAG                         GTGTTCCTTTCATTCTTAAAGCTGGT-AAGNCATTGAGTTCAAAGAAAGCA
genomic: CCCAACTTTTGCATCTGTTGTTCTTCGGGTACACAATGAAAGATGGGAAGgtatatcttc ... tgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAG-CATTGAGTTCAAAGAAAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaccataatatctttactttctgtatcaaccttctaatattcatgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAGAAGTTCGGGTGCAATTCAAGGATGTCCCTGGTGACATTTTTAGAA
                                 ttctaat  putative branch site (score: 2)
      ataatatctttacttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatatcttcacccacatgacagtatctgtacatattgtagttgaaatggatataattgaaatacttgctctctgtttttttcattcaatgtgccttttctcaaccataatatctttactttctgtatcaaccttctaatattcatgctttgcagGTGTTCCTTTCATTCTTAAAGCTGGTAAAGCATTGAGTTCAAAGAAAGCAGAAGTTCGGGTGCAATTCAAGGATGTCCCTGGTGACATTTTTAGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG