1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...cttgcttgggaccaaaagattttgttgtttgtttgtttgtttgtactcaaacggcagtacttatttagatggctattgttaatgggcactactcttacagGATGTTGCAAGGAGTGTGACAACACGTGATGTACAGGAAGCGCGTCGACAAGACATAAAGAATGAAATCCTCAATTCTGAGAA
species | Zea mays |
transcript | GRMZM2G129554_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCCCATTACTTACGAAAGATGCTGTTGAATCTCTACGGTATAGGGCTCAG GATGTTGCAAGGAGTGTGACAACACGTGATGTACAGGAAGCGCGTCGACAAEST: gi|6102016|gb|AW126486.1|AW126486
genomic: TCCCATTACTTACGAAAGATGCTGTTGAATCTCTACGGTATAGGGCTCAGgtctgcaata ... actcttacagGATGTTGCAAGGAGTGTGACAACACGTGATGTACAGGAAGCGCGTCGACAA
EST: TCCCATTACTTACGAAAGATGCTGNTGAATCTCTACGGTATAGGGCTCAG GATGTTGCAAGGAGTGGGACAACACGTGATGTACTGGAAGCGCGTCGACCAEST: gi|21809935|gb|BQ668253.1|BQ668253
genomic: TCCCATTACTTACGAAAGATGCTGTTGAATCTCTACGGTATAGGGCTCAGgtctgcaata ... actcttacagGATGTTGCAAGGAGTGTGACAACACGTGATGTACAGGAAGCGCGTCGACAA
EST: TCCCATTACTTACGAAAGATGCTGTTGAATCTCTACGGTATAGGGCTCAG GATGTTGCAAGGAGTGTGACAACACGTGATGTACAGGAAGCGCGTCGACAAEST: gi|87155790|gb|DY400579.1|DY400579
genomic: TCCCATTACTTACGAAAGATGCTGTTGAATCTCTACGGTATAGGGCTCAGgtctgcaata ... actcttacagGATGTTGCAAGGAGTGTGACAACACGTGATGTACAGGAAGCGCGTCGACAA
EST: TCCCATTACTTACGAAAGATGCTGTTGAATCTCTACGGTATAGGGCTCAG GATGTTGCAAGGAGTGTGACAACACGTGATGTACAGGAAGCGCGTCGACAAEST: gi|26560161|gb|CA832396.1|CA832396
genomic: TCCCATTACTTACGAAAGATGCTGTTGAATCTCTACGGTATAGGGCTCAGgtctgcaata ... actcttacagGATGTTGCAAGGAGTGTGACAACACGTGATGTACAGGAAGCGCGTCGACAA
EST: TCCCATTACTTACGAAAGATGCTGTTGAATCTCTACGGTATAGGGCTCAG GATGTTGCAAGGAGTGTGACAACACGTGATGTACAGGAAGCGCGTCGACAAEST: gi|32930851|gb|CF035663.1|CF035663
genomic: TCCCATTACTTACGAAAGATGCTGTTGAATCTCTACGGTATAGGGCTCAGgtctgcaata ... actcttacagGATGTTGCAAGGAGTGTGACAACACGTGATGTACAGGAAGCGCGTCGACAA
EST: TCCCATTACTTACGAAAGATGCTGTTGAATCTCTACGGTATAGGGCTCAG GATGTTGCAAGGAGTGTGACAACACGTGATGTACAGGAAGCGCGTCGACAA
genomic: TCCCATTACTTACGAAAGATGCTGTTGAATCTCTACGGTATAGGGCTCAGgtctgcaata ... actcttacagGATGTTGCAAGGAGTGTGACAACACGTGATGTACAGGAAGCGCGTCGACAA
ctcaaacggcagtacttatttagatggctattgttaatgggcactactcttacagGATGTTGCAAGGAGTGTGACAACACGTGATGTACAGGAAGCGCGTCGACAAGACATAAAGAATGAAATCCTCAATTCTGAGAA
tgttaat putative branch site (score: 74)
ctactctt putative PPT
tacttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgcttgggaccaaaagattttgttgtttgtttgtttgtttgtactcaaacggcagtacttatttagatggctattgttaatgggcactactcttacagGATGTTGCAAGGAGTGTGACAACACGTGATGTACAGGAAGCGCGTCGACAAGACATAAAGAATGAAATCCTCAATTCTGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- tgcttgg
- - - - - accaaaa
- - - - - - - - - - - tgttgtt
- - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - actcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctattg