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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattatatctattgtcacactcatttggttgttattaatcatattttctgacctaaagaattaaatttacagGATGAAGCTCTACTTACAGATTGGAAGCAGCAGTTGGATCGTGATGTTGAAACCCTTAAAGCCAAATCAAATATTGGTAGCATTCGCATG

Basic information

species Zea mays
transcript GRMZM2G126453_T01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126453_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g43970.1 (Oryza sativa), 3'ss of exon 16
gtgattatatctattgtcacactcatttggttgtta---ttaatcatattttctgacctaaagaattaaatttacagGATGAAGCTCTACTTACAGATTGGAAGCAGCAGTTGGATCGTGATGTTGAAACCCTTAAAGCCAAATCAAATATTGGTAGCATTCGCATG
||| | |||||  |||| |  ||  ||    | |||   | ||  ||||| ||| | | ||  || | ||||| ||||||||| |  |||| |||||||||||||| ||  |||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||| |
gtgctaatatcccttgttat-cttgttcaagtattatgctcaagtatattatctaatccaagcaactgaatttgcagGATGAAACATTACTCACAGATTGGAAGCAACAACTGGATCGTGACGTTGAAACCCTTAAAGCTAAATCCAATGTTGGTAGCATTCGCACG

upper sequence: GRMZM2G126453_T02 (Zea mays), 3'ss of exon 1
lower sequence: Vv07s0005g00200.t01 (Vitis vinifera), 3'ss of exon 15
gtgattatatctattgtcacact-catttggttgttattaatcatattttctgacctaaagaattaaat--------------ttacagGATGAAGCTCTACTTACAGATTGGAAGCAGCAGTTGGATCGTGATGTTGAAACCCTTAAAGCCAAATCAAATATTGGTAGCATTCGCATG
|| |||    |||   |||   |       | || |  |  ||   ||  ||||   ||  ||| ||||              || ||||||||  | || |||   |||||||||||||||||||| ||||||| |||||| || |||||  |  |||| |||| || ||||||    
gt-attgagcctacattcagtttatgacgaggtggtgcttctctggttacctgaaggaagtaataaaatgtttgtgagaattgttgcagGATGAGTCACTTCTTTTGGATTGGAAGCAGCAGTTGGACCGTGATGGTGAAACTCTAAAAGCACAGGCAAACATTGTTAACATTCGTTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67031399|gb|CO460148.1|CO460148
EST:     ACATCTAAATAAACTTTTCCNCAA-CAAAATTTTGATCCAGCTTCCACAG                         GATGAAGCTCTACTTACAGATTGGAAGCAGCAGTTGGATCGTGATGTTGAA
genomic: ACATCTAAATAAACTTTTCC-CAAACAAAATTTTGATCCAGCTTCCACAGgtgattatat ... aaatttacagGATGAAGCTCTACTTACAGATTGGAAGCAGCAGTTGGATCGTGATGTTGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactcatttggttgttattaatcatattttctgacctaaagaattaaatttacagGATGAAGCTCTACTTACAGATTGGAAGCAGCAGTTGGATCGTGATGTTGAAACCCTTAAAGCCAAATCAAATATTGGTAGCATTCGCATG
           ttgttattaatcatat  TA-rich tract