Sequence
atgc intronic sequence ATGC exonic sequencegcaagtttgcatccttaatccttattatatttaagctgtagattttagttattccatgcaccccaattaaataattgcttcaaatttattcatgtagGTGACAATGTTCAAGGGAGAAATAAACTTGCACGAGAAATGAGTGATGTAATGGGAGAAGGCAATATAGAGAGCATGCTTTCAGTTGAAATGGGCCTTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G126266_T01 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os01g70320.1 (Oryza sativa), 3'ss of exon 11
gcaagtttgcat-ccttaatccttattatatttaagctgtagattttagtt-attccatgcaccccaattaaataattgcttcaaatttattcatgtagGTG---ACAATGTTCAAGGGAGAAATAAACTTGCACGAGAAATGAGTGATGTAATGGGAGAAGGCAATATAGAGAGCATGCTTTCAGTTGAAATGGGCCTTAG
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--------gcatgtctgcatctttataatatacaagttgtagatcgtagtttgttccatgtactccagttaattattc---ttggatcttttcaagcagGTGAGGATGACGCCCAAAGGAGAAATAAACTTGTGCGAGATATGAGTGATGTAATGGGAGAAGGCAATATAGAGAGCATGCTCTCAGTTGAAATGGGGCT---
upper sequence: GRMZM2G126266_T01 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA10G44630.1 (Glycine max), 3'ss of exon 11
-------------------------------------------------------gcaagt--ttgcatccttaatccttattatatttaagctgtagattttagttattccatg--caccccaatt------aaataattgcttcaaatttattcatgtagGTGACAATG---TTCAAGGGAGAAATAAACTTGCACGAGAAATGAGTGATGTAATGGGAGAAGGCAATATAGAGAGCATGCTTTCAGTTGAAATGGGCCTTAG
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gcatgaaataaagatctggactctacagttcatattagtttggctgcatagtagcgcaaatctttgctgttatattttttcttatagtgatgattttcattatt-ctatttcatggacatgtgaattttctagagataattgttgtgatt---tttaagcagGTGATGATGCAATAGAGAAGAGGAGCAAACTTGTTCCTGACTTAAATGATCTTACTGGAGAAGGAAATATTGAAAGTATGCTTTCAGTTGAAATGGGACT---
upper sequence: GRMZM2G126266_T01 (Zea mays), 3'ss of exon 10
lower sequence: Vv17s0000g00390.t01 (Vitis vinifera), 3'ss of exon 11
gcaagtttgcatccttaatcctta-ttatatttaag-ctgtagattttagttattccatgcaccccaattaaataatt--gcttcaaatttattcatgtagGTGACAATGTTCAAGGGAGAAATAAACTTGCACGAGAAATGAGTGATGTAATGGGAGAAGGCAATATAGAGAGCATGCTTTCAGTTGAAATGGGCCTTAG
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gttagtttacttgttggttttacaactttattcatgactgttg--tttaagttttcttttcatcgcttgtatttcattatgcattctatgtcatcctgcagGTGGTGAGGATCCAGATAGGAGTAAACTTGTCCGAGATTTGAGTGATCTAACCGGAGAAGGAAATATCGAGAGCATGCTTTCAGTTGAAATGGGTTTGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttagttattccatgcaccccaattaaataattgcttcaaatttattcatgtagGTGACAATGTTCAAGGGAGAAATAAACTTGCACGAGAAATGAGTGATGTAATGGGAGAAGGCAATATAGAGAGCATGCTTTCAGTTGAAATGGGCCTTAG
tttattc CT-rich tract
aattaaataattgctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcaagtttgcatccttaatccttattatatttaagctgtagattttagttattccatgcaccccaattaaataattgcttcaaatttattcatgtagGTGACAATGTTCAAGGGAGAAATAAACTTGCACGAGAAATGAGTGATGTAATGGGAGAAGGCAATATAGAGAGCATGCTTTCAGTTGAAATGGGCCTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA