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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgactagaatgctaaagaaaaaaaaatcttatcttggcaaggtatcgataacactgacgtcgtctaaatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT

Basic information

species Zea mays
transcript GRMZM2G122135_T04
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7119143|gb|AW497500.1|AW497500
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|16926819|gb|BM079887.1|BM079887
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|4967137|gb|AI691859.1|AI691859
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|17930061|gb|BM267021.1|BM267021
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|16919855|gb|BM074388.1|BM074388
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|40336631|gb|CK370701.1|CK370701
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|50339641|gb|CO534767.1|CO534767
EST:     CTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: CTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|60343317|gb|DN210290.1|DN210290
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|29947616|gb|CB816748.1|CB816748
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|32837252|gb|CD976930.1|CD976930
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGT
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGT
EST: gi|78543701|gb|DV621199.1|DV621199
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|60352636|gb|DN219609.1|DN219609
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|18167158|gb|BM336997.1|BM336997
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|37388540|gb|CF631479.1|CF631479
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|21395199|gb|BQ539629.1|BQ539629
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|211206781|gb|FL154157.1|FL154157
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTACAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|5607926|gb|AI901593.1|AI901593
EST:     CACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: CACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|5714248|gb|AI944233.1|AI944233
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTACAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|16926507|gb|BM079570.1|BM079570
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|78119292|gb|DV537676.1|DV537676
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|5847127|gb|AW000206.1|AW000206
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTACAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|6022239|gb|AW067167.1|AW067167
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|5525452|gb|AI861345.1|AI861345
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTACAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|33101424|gb|CF061384.1|CF061384
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTAC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTAC
EST: gi|78025113|gb|DV493500.1|DV493500
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|16925569|gb|BM078637.1|BM078637
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|37393714|gb|CF634122.1|CF634122
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|17931830|gb|BM268790.1|BM268790
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|78022431|gb|DV490818.1|DV490818
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTACAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaatcttatcttggcaaggtatcgataacactgacgtcgtctaaatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT
       ttatctt  TA-rich tract