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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgactagaatgctaaagaaaaaaaaatcttatcttggcaaggtatcgataacactgacgtcgtctaaatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT

Basic information

species Zea mays
transcript GRMZM2G122135_T01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31357128|gb|CD441485.1|CD441485
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTACAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|18169928|gb|BM339768.1|BM339768
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|16377717|gb|BI992076.1|BI992076
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|5499176|gb|AI855043.1|AI855043
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|22549241|gb|BU101442.1|BU101442
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|18163119|gb|BM332958.1|BM332958
EST:     TCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: TCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|5018372|gb|AI714565.1|AI714565
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|84977249|gb|DW475671.1|DW475671
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTACAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|29545063|gb|CB605241.1|CB605241
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|13126315|gb|BG316885.1|BG316885
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAGAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|5740565|gb|AI948255.1|AI948255
EST:     ATCNCTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGCCAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCCCTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|18172136|gb|BM347524.1|BM347524
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|21891388|gb|BQ744601.1|BQ744601
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCCCTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|32837252|gb|CD976930.1|CD976930
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGT
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGT
EST: gi|31362520|gb|CD446877.1|CD446877
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTACAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|37393714|gb|CF634122.1|CF634122
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|29947616|gb|CB816748.1|CB816748
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|17931830|gb|BM268790.1|BM268790
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|18173255|gb|BM348643.1|BM348643
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|60352636|gb|DN219609.1|DN219609
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|211206781|gb|FL154157.1|FL154157
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTACAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|24763713|gb|CA398884.1|CA398884
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCTTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTACAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|16922583|gb|BM075638.1|BM075638
EST:     TCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: TCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|60343317|gb|DN210290.1|DN210290
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|20803005|gb|BQ294055.1|BQ294055
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|17930245|gb|BM267205.1|BM267205
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|33101424|gb|CF061384.1|CF061384
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTAC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTAC
EST: gi|17930061|gb|BM267021.1|BM267021
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|37387213|gb|CF630799.1|CF630799
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|40336631|gb|CK370701.1|CK370701
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|18169253|gb|BM339093.1|BM339093
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|18164243|gb|BM334082.1|BM334082
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|211206778|gb|FL154154.1|FL154154
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTACAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|18167158|gb|BM336997.1|BM336997
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|37388540|gb|CF631479.1|CF631479
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|78025113|gb|DV493500.1|DV493500
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|78119292|gb|DV537676.1|DV537676
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|6056718|gb|AW091123.1|AW091123
EST:     ATCCCTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTACAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|24766051|gb|CA401209.1|CA401209
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTACAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|60349044|gb|DN216017.1|DN216017
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|31362029|gb|CD446386.1|CD446386
EST:     CCAGTGGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTACAGTCACTTGTACC
genomic: CCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
EST: gi|18175671|gb|BM350900.1|BM350900
EST:     ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAG                         GGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC
genomic: ATCACTTGTCAAAAGCTGCTTCCAGTCGTCATTAATTCTTCAAAGGACAGgtgagtgact ... aatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaatcttatcttggcaaggtatcgataacactgacgtcgtctaaatctgtcagGGTTCCTAACATCAAGTTCAACGTTGCAAAAGTACTAAAGTCACTTGTACCGATCCTCGATCAATCT
       ttatctt  TA-rich tract