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gttagaatcaaatgctaaccctgagtttactgagtactatttagttgcaatttgctgacaaaagaattatactttctaagGCAAATGATTCTGCGTCTGAAGATGGAGATTATGTGGCTGCTGAAAATCAAAAGAAACAATCCAAGAAA
species | Zea mays |
transcript | GRMZM2G121210_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAACATCCAGCAAG GCAAATGATTCTGCGTCTGAAGATGGAGATTATGTGGCTGCTGAAAATCAAEST: gi|32809224|gb|CD961458.1|CD961458
genomic: AACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAACATCCAGCAAGgttagaatca ... actttctaagGCAAATGATTCTGCGTCTGAAGATGGAGATTATGTGGCTGCTGAAAATCAA
EST: AACCAGCGGTTGCAAAGCGTGGAGCTCAGCCGAAGAAAACATCCAGCAAG GCAAATGATTCTGCGTCTGAAGATGGAGATTATGTGGCTGCTGAAAATCAAEST: gi|22819854|gb|BU499944.1|BU499944
genomic: AACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAACATCCAGCAAGgttagaatca ... actttctaagGCAAATGATTCTGCGTCTGAAGATGGAGATTATGTGGCTGCTGAAAATCAA
EST: AACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAACATCCAGCANG GCAAATGATTCTGCGTCTGAAGATGGAGATEST: gi|211185794|gb|FL324655.1|FL324655
genomic: AACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAACATCCAGCAAGgttagaatca ... actttctaagGCAAATGATTCTGCGTCTGAAGATGGAGAT
EST: AACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAACATCCAGCAAG GCAAATGATTCTGCGTCTGAAGATGGAGATTATGTGGCTGCTGAAAATCAAEST: gi|21987134|gb|BQ778662.1|BQ778662
genomic: AACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAACATCCAGCAAGgttagaatca ... actttctaagGCAAATGATTCTGCGTCTGAAGATGGAGATTATGTGGCTGCTGAAAATCAA
EST: AACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAACATCCAGCAAG GCAAATGATTCTGCGTCTGAAGATGGAGATTATGTGGCTGCTGAAAATCAAEST: gi|32791656|gb|CD943892.1|CD943892
genomic: AACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAACATCCAGCAAGgttagaatca ... actttctaagGCAAATGATTCTGCGTCTGAAGATGGAGATTATGTGGCTGCTGAAAATCAA
EST: AACCAGCGGCTGCAAAGCGTGGAGCTCAACCGAAGAAAACATCCAGCAAG GCAAATGATTCTGCGTCTGAAGATGGAGATTATGTGGCTGCTGAAAATCAAEST: gi|31664432|gb|CD573365.1|CD573365
genomic: AACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAACATCCAGCAAGgttagaatca ... actttctaagGCAAATGATTCTGCGTCTGAAGATGGAGATTATGTGGCTGCTGAAAATCAA
EST: AACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAACATCCAGCAAG GCAAATGATTCTGCGTCTGAAGATGGAGATTATGTGGCTGCTGAAAATCAAEST: gi|5343131|gb|AI795541.1|AI795541
genomic: AACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAACATCCAGCAAGgttagaatca ... actttctaagGCAAATGATTCTGCGTCTGAAGATGGAGATTATGTGGCTGCTGAAAATCAA
EST: AACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAACATCCAGCAAG GCAAATGATTCTGCGTCTGAAGATGGAGATTATGTGGCTGCTGAAAATCAA
genomic: AACCAGCGGTTGCAAAGCGTGGAGCTCAACCGAAGAAAACATCCAGCAAGgttagaatca ... actttctaagGCAAATGATTCTGCGTCTGAAGATGGAGATTATGTGGCTGCTGAAAATCAA
tttactgagtactatttagttgcaatttgctgacaaaagaattatactttctaagGCAAATGATTCTGCGTCTGAAGATGGAGATTATGTGGCTGCTGAAAATCAAAAGAAACAATCCAAGAAA
tgctgac putative branch site (score: 51)
tactttct putative PPT
aaaagaattatacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagaatcaaatgctaaccctgagtttactgagtactatttagttgcaatttgctgacaaaagaattatactttctaagGCAAATGATTCTGCGTCTGAAGATGGAGATTATGTGGCTGCTGAAAATCAAAAGAAACAATCCAAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA