1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagttttcttttttttctttttacaaatcgggacaggtgattattagttctcctgcctctgttgtgtttgcacacaagcaaacctcgtactgagagaatctgtgcaccgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCGCCCAAGCGTGGAATTACCACCGCATCCTAGCTGTTGGATACACACATAG
species | Zea mays |
transcript | GRMZM2G120578_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCGEST: gi|37380776|gb|CF627223.1|CF627223
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCGEST: gi|6448423|gb|AW181189.1|AW181189
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCAAAAAAGCTAACTGCGGCGEST: gi|32866078|gb|CF005760.1|CF005760
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCGEST: gi|113701473|gb|EE678977.1|EE678977
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCGEST: gi|78117804|gb|DV536191.1|DV536191
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCGEST: gi|4804277|gb|AI666143.1|AI666143
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCGEST: gi|78024870|gb|DV493257.1|DV493257
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCGEST: gi|12968943|gb|BG265784.1|BG265784
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCGEST: gi|110496613|gb|EE015080.1|EE015080
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGGGEST: gi|211191319|gb|FL465409.1|FL465409
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG GAGCAGGCGGAGGAAKTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCGEST: gi|89247054|gb|DY618840.1|DY618840
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCGEST: gi|37382012|gb|CF627919.1|CF627919
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCGEST: gi|211042510|gb|FL401130.1|FL401130
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
EST: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACG GAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
genomic: CGACATTTGCCAAGAGGGAGCTAGAAGCATACTGTGCTTCCACGGAAACGgtgagttttc ... cgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCG
tgtgtttgcacacaagcaaacctcgtactgagagaatctgtgcaccgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCGCCCAAGCGTGGAATTACCACCGCATCCTAGCTGTTGGATACACACATAG
ccgtttt CT-rich tract
ttttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttttcttttttttctttttacaaatcgggacaggtgattattagttctcctgcctctgttgtgtttgcacacaagcaaacctcgtactgagagaatctgtgcaccgttttacagGAGCAGGCGGAGGAAGTAGCGGCCACGGCACCACAAAAGCTAACTGCGGCGCCCAAGCGTGGAATTACCACCGCATCCTAGCTGTTGGATACACACATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT