1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtttgttatctgattttaattttacatgttccgctttagtatgagaactctattcactttgctggatttcatttgaactgcaaatatggttttctgcagTTAACATTGGCAGATGTGAAGAACAGCAGTGAGGACACTGAAATGATTCCTGCTGTTGATGTTGATAACATTGAAGATCCGAGTGATGAATCTGCTGTAG
species | Zea mays |
transcript | GRMZM2G118917_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTGCTTTTGAAAGTATAGTGGAGCAGCTGAAGAAGGGAAAACTGGAAGAG TTAACATTGGCAGATGTGAAGAACAGCAGTGAGGACACTGAAATGATTCCTEST: gi|60337067|gb|DN204040.1|DN204040
genomic: GTGCTTTTGAAAGTATAGTGGAGCAGCTGAAGAAGGGAAAACTGGAAGAGgtttgttatc ... ttttctgcagTTAACATTGGCAGATGTGAAGAACAGCAGTGAGGACACTGAAATGATTCCT
EST: GTGCTTTTGAAAGTATAGTGGAGCAGCTGAAGAAGGGAAAACTGGAAGAG TTAACATTGGCAGATGTGAAGAACAGCAGTGAGGACACTGAAATGATTCCTEST: gi|26456572|gb|CA828155.1|CA828155
genomic: GTGCTTTTGAAAGTATAGTGGAGCAGCTGAAGAAGGGAAAACTGGAAGAGgtttgttatc ... ttttctgcagTTAACATTGGCAGATGTGAAGAACAGCAGTGAGGACACTGAAATGATTCCT
EST: G-GCTTTTGAAAGTATAG-GGAGCAGCTGAAGAAGGGAAAACTGGAAGAT TTAACATTGGCAGATGTGAAGAACAGCAGTGAGGACACTGAAATGATTCCTEST: gi|211248404|gb|FL329614.1|FL329614
genomic: GTGCTTTTGAAAGTATAGTGGAGCAGCTGAAGAAGGGAAAACTGGAAGAGgtttgttatc ... ttttctgcagTTAACATTGGCAGATGTGAAGAACAGCAGTGAGGACACTGAAATGATTCCT
EST: TAGTGGAGCAGCTGAAGAAGGGAAAACTGGAAGAG TTAACATTGGCAGATGTGAAGAACAGCAGTGAGGACACTGAAATGATTCCT
genomic: TAGTGGAGCAGCTGAAGAAGGGAAAACTGGAAGAGgtttgttatc ... ttttctgcagTTAACATTGGCAGATGTGAAGAACAGCAGTGAGGACACTGAAATGATTCCT
gaactctattcactttgctggatttcatttgaactgcaaatatggttttctgcagTTAACATTGGCAGATGTGAAGAACAGCAGTGAGGACACTGAAATGATTCCTGCTGTTGATGTTGATAACATTGAAGATCCGAGTGATGAATCTGCTGTAG
ttttctgc CT-rich tract
atttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttatctgattttaattttacatgttccgctttagtatgagaactctattcactttgctggatttcatttgaactgcaaatatggttttctgcagTTAACATTGGCAGATGTGAAGAACAGCAGTGAGGACACTGAAATGATTCCTGCTGTTGATGTTGATAACATTGAAGATCCGAGTGATGAATCTGCTGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA