1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...acgtgtgtgctgaaagttgcaagcatgtcaagcgagacaaatcctgtgcaccgttaagacaacaattttgattgcacccgatgcacttgttattttccagGCTGCGAAGCAAGCGCGACTTGAGAAGTTTGAGATACCAGTCAAAATCAAGCTGATACCAGAGCCATGGACCCCCGAGTCGGGACTCGTCACTGCTGCCC
species | Zea mays |
transcript | GRMZM2G118286_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGTGCCAGAAGCAAGAGGCTGTTAAAGAAGTGCTTGGATCTTTAGCAAAG GCTGCGAAGCAAGCGCGACTTGAGAAGTTTGAAATACCAGTCAAAATCAAGEST: gi|32940879|gb|CF045698.1|CF045698
genomic: TGTGCCAGAAGCAAGAGGCTGTTAAAGAAGTGCTTGGATCTTTAGCAAAGgttcgtgttt ... tattttccagGCTGCGAAGCAAGCGCGACTTGAGAAGTTTGAGATACCAGTCAAAATCAAG
EST: TGTGCCAGAAGCAAGAGGCTGTTAAAGAAGTGCTTGGATCTTTAGCAAAG GCTGCGAAGCAAGCGCGACTTGAGAAGTTTGAAATACCAGTCAAAATCAAGEST: gi|21759887|gb|BQ635428.1|BQ635428
genomic: TGTGCCAGAAGCAAGAGGCTGTTAAAGAAGTGCTTGGATCTTTAGCAAAGgttcgtgttt ... tattttccagGCTGCGAAGCAAGCGCGACTTGAGAAGTTTGAGATACCAGTCAAAATCAAG
EST: TGTGCCAGAAGCAAGAGGCTGTTAAAGAAGTGCTTGGATCTTTAGCAAAG GCTGCGAAGCAAGCGCGACTTGAGAAGTTTGAGATACCAGTCAAAATCAAGEST: gi|33097438|gb|CF057398.1|CF057398
genomic: TGTGCCAGAAGCAAGAGGCTGTTAAAGAAGTGCTTGGATCTTTAGCAAAGgttcgtgttt ... tattttccagGCTGCGAAGCAAGCGCGACTTGAGAAGTTTGAGATACCAGTCAAAATCAAG
EST: TGTGCCAGAAGCAAGAGGCTGTTAAAGAAGTGCTTGGATCTTTAGCAAAG GCTGCGAAGCAAGCGCGACTTGAGAAGTTTGAAATACCAGTCAAAATCAAGEST: gi|78081876|gb|DV510288.1|DV510288
genomic: TGTGCCAGAAGCAAGAGGCTGTTAAAGAAGTGCTTGGATCTTTAGCAAAGgttcgtgttt ... tattttccagGCTGCGAAGCAAGCGCGACTTGAGAAGTTTGAGATACCAGTCAAAATCAAG
EST: TGTGCCAGAAGCAAGAGGCTGTTAAAGAAGTGCTTGGATCTTTAGCAAAG GCTGCGAAGCAAGCGCGACTTGAGAAGTTTGAGATACCAGTCAAAATCAAGEST: gi|51592736|gb|CV071882.1|CV071882
genomic: TGTGCCAGAAGCAAGAGGCTGTTAAAGAAGTGCTTGGATCTTTAGCAAAGgttcgtgttt ... tattttccagGCTGCGAAGCAAGCGCGACTTGAGAAGTTTGAGATACCAGTCAAAATCAAG
EST: GAAGCAAGAGGCTGTTAAAGAAGTGCTTGGATCTTTAGCAAAG GCTGCGAAGCAAGCGCGACTTGAGAAGTTTGAGATACCAGTCAAAATCAAGEST: gi|5343182|gb|AI795367.1|AI795367
genomic: GAAGCAAGAGGCTGTTAAAGAAGTGCTTGGATCTTTAGCAAAGgttcgtgttt ... tattttccagGCTGCGAAGCAAGCGCGACTTGAGAAGTTTGAGATACCAGTCAAAATCAAG
EST: TGTGCCAGAAGCAAGAGGCTGTTAAAGAAGTGCTTGGATCTTTAGCAAAG GCTGCGAAGCAAGCGCGACTTGAGAAGTTTGAGATACCAGTCAAAATCAAGEST: gi|91049771|gb|EB160189.1|EB160189
genomic: TGTGCCAGAAGCAAGAGGCTGTTAAAGAAGTGCTTGGATCTTTAGCAAAGgttcgtgttt ... tattttccagGCTGCGAAGCAAGCGCGACTTGAGAAGTTTGAGATACCAGTCAAAATCAAG
EST: TGTGCCAGAAGCAAGAGGCTGTTAAAGAAGTGCTTGGATCTTTAGCAAAG GCTGCGAAGCAAGCGCGACTTGAGAAGTTTGAGATACCAGTCAAAATCAAG
genomic: TGTGCCAGAAGCAAGAGGCTGTTAAAGAAGTGCTTGGATCTTTAGCAAAGgttcgtgttt ... tattttccagGCTGCGAAGCAAGCGCGACTTGAGAAGTTTGAGATACCAGTCAAAATCAAG
gtgcaccgttaagacaacaattttgattgcacccgatgcacttgttattttccagGCTGCGAAGCAAGCGCGACTTGAGAAGTTTGAGATACCAGTCAAAATCAAGCTGATACCAGAGCCATGGACCCCCGAGTCGGGACTCGTCACTGCTGCCC
ttttgat putative branch site (score: 53)
ttattttcc putative PPT
aattttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgtgtgtgctgaaagttgcaagcatgtcaagcgagacaaatcctgtgcaccgttaagacaacaattttgattgcacccgatgcacttgttattttccagGCTGCGAAGCAAGCGCGACTTGAGAAGTTTGAGATACCAGTCAAAATCAAGCTGATACCAGAGCCATGGACCCCCGAGTCGGGACTCGTCACTGCTGCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - -tgctgaa
- - - - - - - - -tgcaagc
- - - - - - - - - - - - - - - - - agacaaa
- - - - - - - - - - - - - - - - - - - - - - -gtgcacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgcac