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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttacctcttccaatctgcttagaaacggtttgaaagactgttttgtgcttctgctccttcatctgtatctgaccccacgggaagaatatgataaattatgttgtgttggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG

Basic information

species Zea mays
transcript GRMZM2G112149_T03
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33102527|gb|CF062487.1|CF062487
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32923431|gb|CF028243.1|CF028243
EST:     GGTCCGGTCACAATCCTGAACTAGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32923437|gb|CF028249.1|CF028249
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32923111|gb|CF027923.1|CF027923
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32928142|gb|CF032954.1|CF032954
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|67023444|gb|CO452193.1|CO452193
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTGAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32846737|gb|CD986418.1|CD986418
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32921924|gb|CF026736.1|CF026736
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32923249|gb|CF028061.1|CF028061
EST:     GGTCCGGTCACAATCCTGAACTAGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32923251|gb|CF028063.1|CF028063
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32920338|gb|CF025150.1|CF025150
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32922289|gb|CF027101.1|CF027101
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32922758|gb|CF027570.1|CF027570
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32923253|gb|CF028065.1|CF028065
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32920308|gb|CF025120.1|CF025120
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32922374|gb|CF027186.1|CF027186
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32847081|gb|CD986762.1|CD986762
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32922467|gb|CF027279.1|CF027279
EST:     GGTCCGGTCACAATCCTGAACTAGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32920444|gb|CF025256.1|CF025256
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32922184|gb|CF026996.1|CF026996
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32922607|gb|CF027419.1|CF027419
EST:     GGTCCGGTCACAATCCTGAACTAGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32922618|gb|CF027430.1|CF027430
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32922959|gb|CF027771.1|CF027771
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32923075|gb|CF027887.1|CF027887
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32922801|gb|CF027613.1|CF027613
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32850050|gb|CD989731.1|CD989731
EST:     CAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCANAAAGGAGGTTGAGGA
genomic: CAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32922825|gb|CF027637.1|CF027637
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32847544|gb|CD987225.1|CD987225
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32923373|gb|CF028185.1|CF028185
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32920357|gb|CF025169.1|CF025169
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32923094|gb|CF027906.1|CF027906
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|1546875|gb|AA054818.1|AA054818
EST:     GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32922892|gb|CF027704.1|CF027704
EST:     GGTCCGGTCACAATCCTGAACTAGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32922932|gb|CF027744.1|CF027744
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32922966|gb|CF027778.1|CF027778
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32923171|gb|CF027983.1|CF027983
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32923230|gb|CF028042.1|CF028042
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGGCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32922490|gb|CF027302.1|CF027302
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32850703|gb|CD990384.1|CD990384
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32922150|gb|CF026962.1|CF026962
EST:     GGTCCGGTCACAATCCTGAACTAGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|33094718|gb|CF054712.1|CF054712
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32923009|gb|CF027821.1|CF027821
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32850158|gb|CD989839.1|CD989839
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32922317|gb|CF027129.1|CF027129
EST:     GGTCCGGTCACAATCCTGAACTAGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32922606|gb|CF027418.1|CF027418
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32922616|gb|CF027428.1|CF027428
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32920412|gb|CF025224.1|CF025224
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32923264|gb|CF028076.1|CF028076
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32922985|gb|CF027797.1|CF027797
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32850624|gb|CD990305.1|CD990305
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32846278|gb|CD985959.1|CD985959
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32923021|gb|CF027833.1|CF027833
EST:     GGTCCGGTCACAATCCTGAACTAGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32923275|gb|CF028087.1|CF028087
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32923113|gb|CF027925.1|CF027925
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32923541|gb|CF028353.1|CF028353
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32922529|gb|CF027341.1|CF027341
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32920361|gb|CF025173.1|CF025173
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|15199045|gb|BI423625.1|BI423625
EST:     GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32846795|gb|CD986476.1|CD986476
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32923291|gb|CF028103.1|CF028103
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32922204|gb|CF027016.1|CF027016
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32922116|gb|CF026928.1|CF026928
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTCGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
EST: gi|32849099|gb|CD988780.1|CD988780
EST:     GGTCCGGTCACAATCCTGAACTGGTCATTCGTCAGGAACGACCAGCCTAG                         GTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA
genomic: GGTCCGGTCACAATCCTCAACTGGTCATTCGTCAGGAACGACCAGCCTAGgtttgttacc ... tggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtatctgaccccacgggaagaatatgataaattatgttgtgttggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG
     atctgac  putative branch site (score: 3)
                    aagaatatgataaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgttacctcttccaatctgcttagaaacggtttgaaagactgttttgtgcttctgctccttcatctgtatctgaccccacgggaagaatatgataaattatgttgtgttggcgtacagGTTTGAGACATGCTACCAAATAGCTCTTGCAATCAAAAAGGAGGTTGAGGATCTTGAGGCTGCTGGTATTCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT