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gtttgtgatctgctttcctttgacttcgttttgtattcctgtgcactgctgtgcctctgacagccagtagttaatatgaatatgggctatctacggtattagtttatttatagcttttgctagaagttttaaccagaatttggcttcatgcgagtccacagGTTGGGCTGCTGTACGACGAGGAATCGTTACAAAGCATTTTAGACATGACTTTTGATTGGACAAAGGAGGAAAGAGAGATGCTAAGACGGAAG
species | Zea mays |
transcript | GRMZM2G111579_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCGTTGCCTGCATTTTGG GTTGGGCTGCTGTACGACGAGGAATCGTTACAAAGCATTTTAGACATGACTEST: gi|22715441|gb|BU197765.1|BU197765
genomic: GTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCGTTGCCTGCATTTTGGgtttgtgatc ... gagtccacagGTTGGGCTGCTGTACGACGAGGAATCGTTACAAAGCATTTTAGACATGACT
EST: GGAGGAGATTGTGTGCGTTGCCTGCATTTTGG GTTGGGCTGCTGTACGACGAGGAATCGTTACAAAGCATTTTAGACATGACTEST: gi|166466429|gb|EG150186.1|EG150186
genomic: GGAGGAGATTGTGTGCGTTGCCTGCATTTTGGgtttgtgatc ... gagtccacagGTTGGGCTGCTGTACGACGAGGAATCGTTACAAAGCATTTTAGACATGACT
EST: GCCTGCATTTTGG GTTGGGCTGCTTGTACGACGAGGAATCGTTACAAAGCATTTTAGACATGACEST: gi|211304265|gb|FL001391.1|FL001391
genomic: GCCTGCATTTTGGgtttgtgatc ... gagtccacagGTTGGGCTGC-TGTACGACGAGGAATCGTTACAAAGCATTTTAGACATGAC
EST: GTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCGTTGCCTGCATTTTGG GTTGGGCTGCTGTACGACGAGGAATCGTTACAAAGCATTTTAGACATGACTEST: gi|18964392|gb|BM660979.1|BM660979
genomic: GTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCGTTGCCTGCATTTTGGgtttgtgatc ... gagtccacagGTTGGGCTGCTGTACGACGAGGAATCGTTACAAAGCATTTTAGACATGACT
EST: GATGGTGGCCCATGGAGGAGATTGTGTGCGTTGCCTGCATTTTGG GTTGGGCTGCTGTACGACGAGGAATCGTTACAAAGCATTTTAGACATGACT
genomic: GATGGTGGCCCATGGAGGAGATTGTGTGCGTTGCCTGCATTTTGGgtttgtgatc ... gagtccacagGTTGGGCTGCTGTACGACGAGGAATCGTTACAAAGCATTTTAGACATGACT
tttatagcttttgctagaagttttaaccagaatttggcttcatgcgagtccacagGTTGGGCTGCTGTACGACGAGGAATCGTTACAAAGCATTTTAGACATGACTTTTGATTGGACAAAGGAGGAAAGAGAGATGCTAAGACGGAAG
ttttaac putative branch site (score: 137)
aagttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgatctgctttcctttgacttcgttttgtattcctgtgcactgctgtgcctctgacagccagtagttaatatgaatatgggctatctacggtattagtttatttatagcttttgctagaagttttaaccagaatttggcttcatgcgagtccacagGTTGGGCTGCTGTACGACGAGGAATCGTTACAAAGCATTTTAGACATGACTTTTGATTGGACAAAGGAGGAAAGAGAGATGCTAAGACGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG