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...cataagtgaatgttttgcttaagtctttgaagtgcacctttgaatcctgtttatccaaccaatgaaaaacataattaactagatcagttgctctttgtagGATAAGGATATTACCTTGAGTGGGGAGCATGTAAGAGAAGGAATGACATGCATCATTTCAGTGAAGGTCCCTAGTCCAGAGTTTGAGGGTCAAACAAAG
species | Zea mays |
transcript | GRMZM2G111014_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CATTGACGAGAACCATTAATAACCTTGCAAAGAAGTCGAAGACTATTAAG GATAAGGATATTACCTTGAGTGGGGAGCATGTAAGAGAAGGAATGACATGCEST: gi|211423925|gb|FL064828.1|FL064828
genomic: CATTGACGAGAACCATTAATAACCTTGCAAAGAAGTCGAAGACTATTAAGgtgataaaat ... ctctttgtagGATAAGGATATTACCTTGAGTGGGGAGCATGTAAGAGAAGGAATGACATGC
EST: CATTGACGAGAACCATTAATAACCTTGCAAAGAAGTCGAAGM-TATTAAG GATAAGGATATTACCTTGAGTGGGGAGCATGTAAGAGAAGGA-TGACATGCEST: gi|211426532|gb|FL064833.1|FL064833
genomic: CATTGACGAGAACCATTAATAACCTTGCAAAGAAGTCGAAGACTATTAAGgtgataaaat ... ctctttgtagGATAAGGATATTACCTTGAGTGGGGAGCATGTAAGAGAAGGAATGACATGC
EST: CATTGACGAGAACCATTAATAACCTTGCAAAGAAGTCGAAGM-TATTAAG GATAAGGATATTACCTTGAGTGGGGAGCATGTAAGAGAAGGAATGACATGC
genomic: CATTGACGAGAACCATTAATAACCTTGCAAAGAAGTCGAAGACTATTAAGgtgataaaat ... ctctttgtagGATAAGGATATTACCTTGAGTGGGGAGCATGTAAGAGAAGGAATGACATGC
cctgtttatccaaccaatgaaaaacataattaactagatcagttgctctttgtagGATAAGGATATTACCTTGAGTGGGGAGCATGTAAGAGAAGGAATGACATGCATCATTTCAGTGAAGGTCCCTAGTCCAGAGTTTGAGGGTCAAACAAAG
aattaac putative branch site (score: 49)
ttgctcttt putative PPT
aatgaaaaacataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cataagtgaatgttttgcttaagtctttgaagtgcacctttgaatcctgtttatccaaccaatgaaaaacataattaactagatcagttgctctttgtagGATAAGGATATTACCTTGAGTGGGGAGCATGTAAGAGAAGGAATGACATGCATCATTTCAGTGAAGGTCCCTAGTCCAGAGTTTGAGGGTCAAACAAAG
- - -gtgaatg
- - - - - - ttttgct
- - - - - - - - - - - - - - - -gtgcacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -caaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaca