1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...gcctacctgatttgaatagtactaaaagactttgttgttgttgtaaaccacattagagaggtatgtgtacatgctaagtccctgaatcttgtatcttcagGGTGGCAATAACATTCACTCCAAAGCTGTTAGTGCAGTAGCGGAAACTTTGAAGGATAATGCAGTGCTGACAACA
species | Zea mays |
transcript | GRMZM2G110289_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGGTTGCTGAGGCTCTGAAAGATAACAAAACAATTTCTACCATAGACTTG GGTGGCAATAACATTCACTCCAAAGCTEST: gi|60354010|gb|DN220983.1|DN220983
genomic: AGGTTGCTGAGGCTCTGAAAGATAACAAAACAATTTCTACCATAGACTTGgtgagtattt ... gtatcttcagGGTGGCAATAACATTCACTCCAAAGCT
EST: AGGTTGCTGAGGCTCTGAAAGATAACAAAACAATTTCTACCATAGACTTG GGTGGCAATAACATTCACTCCAAAGCTGTTAGTGCAGTAGCGGAAACTTTGEST: gi|32840315|gb|CD979996.1|CD979996
genomic: AGGTTGCTGAGGCTCTGAAAGATAACAAAACAATTTCTACCATAGACTTGgtgagtattt ... gtatcttcagGGTGGCAATAACATTCACTCCAAAGCTGTTAGTGCAGTAGCGGAAACTTTG
EST: AGGTTGCTGAGGCTCTGAAAGATAACAAAACAATTTCTACCATAGACTTG GGTGGCAATAACATTCACTCCAAAGCTGTTAGTGCAATAGCGGAAACTTTGEST: gi|67010636|gb|CO439385.1|CO439385
genomic: AGGTTGCTGAGGCTCTGAAAGATAACAAAACAATTTCTACCATAGACTTGgtgagtattt ... gtatcttcagGGTGGCAATAACATTCACTCCAAAGCTGTTAGTGCAGTAGCGGAAACTTTG
EST: AGGTTGCTGAGGCTCTGAAAGATAACAAAACAATTTCTACCATAGACTTG GGTGGCAATAACATTCACTCCAAAGCTGTTAGTGCAATAGCGGAAACTTTGEST: gi|60346680|gb|DN213653.1|DN213653
genomic: AGGTTGCTGAGGCTCTGAAAGATAACAAAACAATTTCTACCATAGACTTGgtgagtattt ... gtatcttcagGGTGGCAATAACATTCACTCCAAAGCTGTTAGTGCAGTAGCGGAAACTTTG
EST: AGGTTGCTGAGGCTCTGAAAGATAACAAAACAATTTCTACCATAGACTTG GGTGGCAATAACATTCACTCCAAAGCTGTTAGTGCAGTAGCGGAAACTTTGEST: gi|12046108|gb|BF728247.1|BF728247
genomic: AGGTTGCTGAGGCTCTGAAAGATAACAAAACAATTTCTACCATAGACTTGgtgagtattt ... gtatcttcagGGTGGCAATAACATTCACTCCAAAGCTGTTAGTGCAGTAGCGGAAACTTTG
EST: AGGTTGCTGAGGCTCTGAAAGATAACAAAACAATTTCTACCATAGACTTG GGTGGCAATAACATTCACTCCAAAGCTGTTAGTGCAATAGCGGAAACTTTG
genomic: AGGTTGCTGAGGCTCTGAAAGATAACAAAACAATTTCTACCATAGACTTGgtgagtattt ... gtatcttcagGGTGGCAATAACATTCACTCCAAAGCTGTTAGTGCAGTAGCGGAAACTTTG
aaccacattagagaggtatgtgtacatgctaagtccctgaatcttgtatcttcagGGTGGCAATAACATTCACTCCAAAGCTGTTAGTGCAGTAGCGGAAACTTTGAAGGATAATGCAGTGCTGACAACA
tatcttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcctacctgatttgaatagtactaaaagactttgttgttgttgtaaaccacattagagaggtatgtgtacatgctaagtccctgaatcttgtatcttcagGGTGGCAATAACATTCACTCCAAAGCTGTTAGTGCAGTAGCGGAAACTTTGAAGGATAATGCAGTGCTGACAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - -tgatttg
- - - - - - - - - - - - - - - - tgttgtt
- - - - - - - - - - - - - - - - - - - - - - -aaccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacatgc