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...taaatatgctactgatatacacgattttaacatgattttctgaacctagattccctatatgctatgcttttttaaacatgtttctttattggtattctagAGCGTCCCACCGGCAGTACTGGTACGATTTCTGAGGGAGCATAGATCTGAATGGGCTGATTACAATATTGATGCGTATTTGGCTTCATCATTGAAGACCA
species | Zea mays |
transcript | GRMZM2G109987_T05 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTGGAGCCCCAGGAGGCATTATTTGTGCGAAGGCATCCATGTTACTGCAG AGCGTCCCACCGGCAGTACTGGTACGATTTCTGAGGGAGCATAGATCTGAAEST: gi|211357661|gb|FL143936.1|FL143936
genomic: TTGGAGCCCCAGGAGGCATTATTTGTGCGAAGGCATCCATGTTACTGCAGgtaagggtga ... ggtattctagAGCGTCCCACCGGCAGTACTGGTACGATTTCTGAGGGAGCATAGATCTGAA
EST: TTGGAGCCCCAGGAGGCATTATTTGTGCGAAGGCATCCATGTTACTGCAG AGCGTCCCACCAGCAGTACTGGTACGATTTCTGAGGGAGCATAGATCCGAAEST: gi|5269007|gb|AI770971.1|AI770971
genomic: TTGGAGCCCCAGGAGGCATTATTTGTGCGAAGGCATCCATGTTACTGCAGgtaagggtga ... ggtattctagAGCGTCCCACCGGCAGTACTGGTACGATTTCTGAGGGAGCATAGATCTGAA
EST: TTGGAGCCCCAGGAGGCATTATTTGTGCGAAGGCATCCATGTTACTGCAG AGCGTCCCACCGGCAGTACTGGTACGATTTCTGAGGGAGCATAGATCTGAAEST: gi|50334712|gb|CO529838.1|CO529838
genomic: TTGGAGCCCCAGGAGGCATTATTTGTGCGAAGGCATCCATGTTACTGCAGgtaagggtga ... ggtattctagAGCGTCCCACCGGCAGTACTGGTACGATTTCTGAGGGAGCATAGATCTGAA
EST: TTGGAGCCCCAGGAGGCATTATTTGTGCGAAGGCATCCATGTTACTGCAG AGCGTCCCACCGGCAGTACTGGTACGATTTCTGAGGGAGCATAGATCTGAAEST: gi|211357659|gb|FL143934.1|FL143934
genomic: TTGGAGCCCCAGGAGGCATTATTTGTGCGAAGGCATCCATGTTACTGCAGgtaagggtga ... ggtattctagAGCGTCCCACCGGCAGTACTGGTACGATTTCTGAGGGAGCATAGATCTGAA
EST: TTGGAGCCCCAGGAGGCATTATTTGTGCGAAGGCATCCATGTTACTGCAG AGCGTCCCACCGGCAGTACTGGTACGATTTCTGAGGGAGCATAGATCTGAAEST: gi|93012109|gb|EB637629.1|EB637629
genomic: TTGGAGCCCCAGGAGGCATTATTTGTGCGAAGGCATCCATGTTACTGCAGgtaagggtga ... ggtattctagAGCGTCCCACCGGCAGTACTGGTACGATTTCTGAGGGAGCATAGATCTGAA
EST: TTGGAGCCCCAGGAGGCATTATTTGTGCGAAGGCATCCATGTTACTGCAG AGCGTCCCACCGGCAGTACTGGTACGATTTCTGAGGGAGCATAGATCTGAAEST: gi|76923031|gb|DV169300.1|DV169300
genomic: TTGGAGCCCCAGGAGGCATTATTTGTGCGAAGGCATCCATGTTACTGCAGgtaagggtga ... ggtattctagAGCGTCCCACCGGCAGTACTGGTACGATTTCTGAGGGAGCATAGATCTGAA
EST: TTGGAGCCCCAGGAGGCATTATTTGTGCGAAGGCATCCATGTTACTGCAG AGCGTCCCACCGGCAGTACTGGTACGATTTCTGAGGGAGCATAGATCTGAA
genomic: TTGGAGCCCCAGGAGGCATTATTTGTGCGAAGGCATCCATGTTACTGCAGgtaagggtga ... ggtattctagAGCGTCCCACCGGCAGTACTGGTACGATTTCTGAGGGAGCATAGATCTGAA
ctagattccctatatgctatgcttttttaaacatgtttctttattggtattctagAGCGTCCCACCGGCAGTACTGGTACGATTTCTGAGGGAGCATAGATCTGAATGGGCTGATTACAATATTGATGCGTATTTGGCTTCATCATTGAAGACCA
ttttttaaacatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaatatgctactgatatacacgattttaacatgattttctgaacctagattccctatatgctatgcttttttaaacatgtttctttattggtattctagAGCGTCCCACCGGCAGTACTGGTACGATTTCTGAGGGAGCATAGATCTGAATGGGCTGATTACAATATTGATGCGTATTTGGCTTCATCATTGAAGACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA