1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aaaacgactactattttgggacggagggagtattatgtaataatttgtcatattttttcctgacgagatgactaatctagtttgtctatgtttattttagTCAAACAAGTGATAGCGGCGGCTATGCTACCTTGGAGACAGAGCAACCTGGGAGCCTAACGCCCATGCTTGGGGACAAAAAG
species | Zea mays |
transcript | GRMZM2G109284_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCTCGTAATCAAACACCATACCTCATTTTAAGTGGCAATGCAAAAACAGG TCAAACAAGTGATAGCGGCGGCTATGCTACCTTGGAGACAGAGCAACCTGGEST: gi|32858341|gb|CD998022.1|CD998022
genomic: TCTCGTAATCAAACACCATACCTCATTTTAAGTGGCAATGCAAAAACAGGgtatgctcac ... tttattttagTCAAACAAGTGATAGCGGCGGCTATGCTACCTTGGAGACAGAGCAACCTGG
EST: TCTCGTAATCAAACACCATACCTCATTTTAAGTGGCAATGCAAAAACAGG TCAAACAAGTGATAGCGGCGGCTATGCTACCTTGGAGACAGAGCAACCTGGEST: gi|32915382|gb|CF020194.1|CF020194
genomic: TCTCGTAATCAAACACCATACCTCATTTTAAGTGGCAATGCAAAAACAGGgtatgctcac ... tttattttagTCAAACAAGTGATAGCGGCGGCTATGCTACCTTGGAGACAGAGCAACCTGG
EST: TCTCGTAATCAAACACCATACCTCATTTTAAGTGGCAATGCAAAAACAGG TCAAACAAGTGATAGCGGCGGCTATGCTACCTTGGAGACAGAGCAACCTGGEST: gi|67015766|gb|CO444515.1|CO444515
genomic: TCTCGTAATCAAACACCATACCTCATTTTAAGTGGCAATGCAAAAACAGGgtatgctcac ... tttattttagTCAAACAAGTGATAGCGGCGGCTATGCTACCTTGGAGACAGAGCAACCTGG
EST: TCTCGTAATCAAACACCATACCTCATTTTAAGTGGCAATGCAAAAACAGG TCAAACAAGTGATAGCGGCGGCTATGCTACCTTGGAGACAGAGCAACCTGGEST: gi|40303475|gb|CK347862.1|CK347862
genomic: TCTCGTAATCAAACACCATACCTCATTTTAAGTGGCAATGCAAAAACAGGgtatgctcac ... tttattttagTCAAACAAGTGATAGCGGCGGCTATGCTACCTTGGAGACAGAGCAACCTGG
EST: TCTCGTAATCAAACACCATACCTCATTTTAAGTGGCAATGCAAAAACAGG TCAAACAAGTGATAGCGGCGGCTATGCTACCTTGGAGACAGAGCAACCTGGEST: gi|32907200|gb|CF012013.1|CF012013
genomic: TCTCGTAATCAAACACCATACCTCATTTTAAGTGGCAATGCAAAAACAGGgtatgctcac ... tttattttagTCAAACAAGTGATAGCGGCGGCTATGCTACCTTGGAGACAGAGCAACCTGG
EST: TCTCGTAATCAAACACCATACCTCATTTTAAGTGGCAATGCAAAAACAGG TCAAACAAGTGATAGCGGCGGCTATGCTACCTTGGAGACAGAGCAACCTGGEST: gi|32907199|gb|CF012012.1|CF012012
genomic: TCTCGTAATCAAACACCATACCTCATTTTAAGTGGCAATGCAAAAACAGGgtatgctcac ... tttattttagTCAAACAAGTGATAGCGGCGGCTATGCTACCTTGGAGACAGAGCAACCTGG
EST: TCTCGTAATCAAACACCATACCTCATTTTAAGTGGCAATGCAAAAACAGG TCAAACAAGTGATAGCGGCGGCTATGCTACCTTGGAGACAGAGCAACCTGGEST: gi|14245628|gb|BG874210.1|BG874210
genomic: TCTCGTAATCAAACACCATACCTCATTTTAAGTGGCAATGCAAAAACAGGgtatgctcac ... tttattttagTCAAACAAGTGATAGCGGCGGCTATGCTACCTTGGAGACAGAGCAACCTGG
EST: TCTCGTAATCAAACGCCATACCTCATTTTAAGTGGCAATGCAAAAGCAGG TCAAACAAGTGATAGCGGCGGCTATGCTACCTTGGAGACAGAGCAACCTGGEST: gi|5816421|gb|AI987337.1|AI987337
genomic: TCTCGTAATCAAACACCATACCTCATTTTAAGTGGCAATGCAAAAACAGGgtatgctcac ... tttattttagTCAAACAAGTGATAGCGGCGGCTATGCTACCTTGGAGACAGAGCAACCTGG
EST: TCTCGTAATCAAACACCATACCTCATTTTAAGTGGCAATGCAAAAACAGG TCAAACAAGTGATAGCGGCGGCTATGCTACCTTGGAGACAGAGCAACCTGGEST: gi|60337809|gb|DN204782.1|DN204782
genomic: TCTCGTAATCAAACACCATACCTCATTTTAAGTGGCAATGCAAAAACAGGgtatgctcac ... tttattttagTCAAACAAGTGATAGCGGCGGCTATGCTACCTTGGAGACAGAGCAACCTGG
EST: TCTCGTAATCAAACACCATACCTCATTTTAAGTGGCAATGCAAAAACAGG TCAAACAAGTGATAGCGGCGGCTATGCTACCTTGGAGACAGAGCAACCTGG
genomic: TCTCGTAATCAAACACCATACCTCATTTTAAGTGGCAATGCAAAAACAGGgtatgctcac ... tttattttagTCAAACAAGTGATAGCGGCGGCTATGCTACCTTGGAGACAGAGCAACCTGG
tgtcatattttttcctgacgagatgactaatctagtttgtctatgtttattttagTCAAACAAGTGATAGCGGCGGCTATGCTACCTTGGAGACAGAGCAACCTGGGAGCCTAACGCCCATGCTTGGGGACAAAAAG
gactaat putative branch site (score: 86)
tttatttt putative PPT
tctatgtttatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaacgactactattttgggacggagggagtattatgtaataatttgtcatattttttcctgacgagatgactaatctagtttgtctatgtttattttagTCAAACAAGTGATAGCGGCGGCTATGCTACCTTGGAGACAGAGCAACCTGGGAGCCTAACGCCCATGCTTGGGGACAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
-aaacgac