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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actgctagatcttgatatttattgggacatcatttatgaggaaatataatcatgcactatggtgcaagctgaatgttagccttgtataaaaaacacgcagGTCCAAGGCATGTTCACTGCCTCGACTTCCACATTACAAGGAGCTCGTTTCTAATCTCGGTCCACTTCATGCCAGACTATCGTGTGAGAATTCTTTGGCT

Basic information

species Zea mays
transcript GRMZM2G107651_T01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32823540|gb|CD963262.1|CD963262
EST:     GATCTAGTCTTGTCAGGGTCAATGTCCAGAAAGATCAG                         GT-CAAGGCATGTTCACTGCCTCGACTTCCACATTACAAGGAGCTCGTTTC
genomic: GATCTAGTCTTGTCAGGGTCAATGTCCAGAAAGATCAGgcaagtatac ... aaacacgcagGTCCAAGGCATGTTCACTGCCTCGACTTCCACATTACAAGGAGCTCGTTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataatcatgcactatggtgcaagctgaatgttagccttgtataaaaaacacgcagGTCCAAGGCATGTTCACTGCCTCGACTTCCACATTACAAGGAGCTCGTTTCTAATCTCGGTCCACTTCATGCCAGACTATCGTGTGAGAATTCTTTGGCT
                                    ttgtataaaaaaca  TA-rich tract