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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagccttcatgtactcatatatttttgcgattttgttccacagctttcttatgcttttattattgttgttgttgttgatgtaaatcctgtatttatacagCTTCAGAGTTTGCCGCAGACATCACTATAATATCTGCAGGATTCGATGCAGCTAGAGGTGACCCTCTGGGTTGTTGTGACGTAAGATTCCTCTTAATTCT

Basic information

species Zea mays
transcript GRMZM2G107309_T03
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107309_T03 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os07g06980.1 (Oryza sativa), 3'ss of exon 12
cagccttcatgtactcatatatttttgcgattttgttccacagctttcttatgcttttattat-tgttgttgttgttgatgtaaatcctgt-atttatacagCTTCAGAGTTTGCCGCAGACATCACTATAATATCTGCAGGATTCGATGCAGCTAGAGGTGACCCTCTGGGTTGTTGTGACGTAAGATTCCTCTTAATTCT
 ||  | |||     | |  ||   |   |||     |    | |||  |||  |  ||||   |||| | ||| |  ||| |  | || | ||  || ||||| |||| |||||  |||||||||| || |||||||||||||| |||||||| || |||||||||||||||||||||||                     
-agattacattattaccttaataccttatattacccgcttgcgtttttgtatattgctattgcatgttctcgtt-tcaatgaattttctttcatgaatgcagCTGCAGAATTTGCTCCAGACATCACCATCATATCTGCAGGATTTGATGCAGCGAGGGGTGACCCTCTGGGTTGTTGTGAT--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71760828|gb|DR958765.1|DR958765
EST:     TGGAGATGATGACTACATCTTTGCTTTTCAGACTGTGGTGCTTCCAATAG                         CTTCAGAGTTTGCCGCAGACATCACTATAATATCTGCAGGATTCGATGCAG
genomic: TGGAGATGATGACTACATCTTTGCTTTTCAGACTGTGGTGCTTCCAATAGgtaataataa ... atttatacagCTTCAGAGTTTGCCGCAGACATCACTATAATATCTGCAGGATTCGATGCAG
EST: gi|211416077|gb|FK952655.1|FK952655
EST:     TGGAGATGATGACTACATCTTTGCTTTTCAGACTGTGGTGCTTCCAATAG                         CTTCAGAGTTTGCCGCAGACATCACTATAATATCTGCAGGATTCGATGCAG
genomic: TGGAGATGATGACTACATCTTTGCTTTTCAGACTGTGGTGCTTCCAATAGgtaataataa ... atttatacagCTTCAGAGTTTGCCGCAGACATCACTATAATATCTGCAGGATTCGATGCAG
EST: gi|211416082|gb|FK952660.1|FK952660
EST:     TGGAGATGATGACTACATCTTTGCTTTTCAGACTGTGGTGCTTCCAATAG                         CTTCAGAGTTTGCCGCAGACATCACTATAATATCTGCAG
genomic: TGGAGATGATGACTACATCTTTGCTTTTCAGACTGTGGTGCTTCCAATAGgtaataataa ... atttatacagCTTCAGAGTTTGCCGCAGACATCACTATAATATCTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttatgcttttattattgttgttgttgttgatgtaaatcctgtatttatacagCTTCAGAGTTTGCCGCAGACATCACTATAATATCTGCAGGATTCGATGCAGCTAGAGGTGACCCTCTGGGTTGTTGTGACGTAAGATTCCTCTTAATTCT
                           tgttgat  putative branch site (score: 4)
         ttttattattgttgtt  TA-rich tract