1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...acaatgagaacactacgattccttgtacttcttacaatggagctgtatccttccactacatatggtgatatacactaaatcttctcacatacacttccagGTTATTTTAGAATGCGTGGATAAGGGGGTTAGAGAAGGCAGGCATCAAGTTCATGCTTGGCTATCCCTCCTTGCAGCCCGGTATAATCAGGTCCTGAGTT
species | Zea mays |
transcript | GRMZM2G106140_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTTATGACAGTGTAGATCCAGAGGTTGTACTGCATATCCTTGTTCATAAG GTTATTTTAGAATGCGTGGATAAGGGGGTTAGAGAAGGCAGGCATCAAGTTEST: gi|85152348|gb|DW587703.1|DW587703
genomic: TTTATGACAGTGTAGATCCAGAGGTTGTACTGCATATCCTTGTTCATAAGgtaattatat ... acacttccagGTTATTTTAGAATGCGTGGATAAGGGGGTTAGAGAAGGCAGGCATCAAGTT
EST: TTTATGACAGTGTAGATCCAGAGGTTGTACTGCATATCCTTGTTCATAAG GTTATTTTAGAATGCGTGGATAAGGGGGTTAGAGAAGGCAGGCATCAANTTEST: gi|211413023|gb|FL028963.1|FL028963
genomic: TTTATGACAGTGTAGATCCAGAGGTTGTACTGCATATCCTTGTTCATAAGgtaattatat ... acacttccagGTTATTTTAGAATGCGTGGATAAGGGGGTTAGAGAAGGCAGGCATCAAGTT
EST: TTTATGACAGTGTAGATCCAGAGGTTGTACTGCATATCCTTGTTCATAAG GTTATTTTAGAATGCGTGGATNAGGGGGTTAGAGAAGGCAGGCATCAAGTTEST: gi|211413026|gb|FL028966.1|FL028966
genomic: TTTATGACAGTGTAGATCCAGAGGTTGTACTGCATATCCTTGTTCATAAGgtaattatat ... acacttccagGTTATTTTAGAATGCGTGGATAAGGGGGTTAGAGAAGGCAGGCATCAAGTT
EST: TTTATGACAGTGTAGATCCAGAGGTTGTACTGCATATCCTTGTTCATAAG GTTATTTTAGAATGCGTGGATNAGGGGGTTAGAGAAGGCAGGCATCAAGTTEST: gi|211413027|gb|FL028967.1|FL028967
genomic: TTTATGACAGTGTAGATCCAGAGGTTGTACTGCATATCCTTGTTCATAAGgtaattatat ... acacttccagGTTATTTTAGAATGCGTGGATAAGGGGGTTAGAGAAGGCAGGCATCAAGTT
EST: TTTATGACAGTGTAGATCCAGAGGTTGTACTGCATATCCTTGTTCATAAG GTTATTTTAGAATGCGTGGATAAGGGGGTTAGAGAAGGCAGGCATCAAGTTEST: gi|211413025|gb|FL028965.1|FL028965
genomic: TTTATGACAGTGTAGATCCAGAGGTTGTACTGCATATCCTTGTTCATAAGgtaattatat ... acacttccagGTTATTTTAGAATGCGTGGATAAGGGGGTTAGAGAAGGCAGGCATCAAGTT
EST: TTTATGACAGTGTAGATCCAGAGGTTGTACTGCATATCCTTGTTCATAAG GTTATTTTAGAATGCGTGGATAAGGGGGTTAGAGAAGGCAGGCATCAAGTTEST: gi|211413024|gb|FL028964.1|FL028964
genomic: TTTATGACAGTGTAGATCCAGAGGTTGTACTGCATATCCTTGTTCATAAGgtaattatat ... acacttccagGTTATTTTAGAATGCGTGGATAAGGGGGTTAGAGAAGGCAGGCATCAAGTT
EST: TTTATGACAGTGTAGATCCAGAGGTTGTACTGCATATCCTTGTTCATAAG GTTATTTTAGAATGCGTGGATNAGGGGGTTAGAGAAGGCAGGCATCAAGTTEST: gi|211517598|gb|FL241950.1|FL241950
genomic: TTTATGACAGTGTAGATCCAGAGGTTGTACTGCATATCCTTGTTCATAAGgtaattatat ... acacttccagGTTATTTTAGAATGCGTGGATAAGGGGGTTAGAGAAGGCAGGCATCAAGTT
EST: TTTATGACAGTGTAGATCCAGAGGTTGTACTGCATATCCTTGTTCATAAG GTTATTTTAGAATGCGTGGATAAGGGGGTTTAGAGAAGGCAKGCATCAAGT
genomic: TTTATGACAGTGTAGATCCAGAGGTTGTACTGCATATCCTTGTTCATAAGgtaattatat ... acacttccagGTTATTTTAGAATGCGTGGATAAGGGGGTT-AGAGAAGGCAGGCATCAAGT
tatccttccactacatatggtgatatacactaaatcttctcacatacacttccagGTTATTTTAGAATGCGTGGATAAGGGGGTTAGAGAAGGCAGGCATCAAGTTCATGCTTGGCTATCCCTCCTTGCAGCCCGGTATAATCAGGTCCTGAGTT
ttctcac putative branch site (score: 59)
cacttcc putative PPT
taaatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaatgagaacactacgattccttgtacttcttacaatggagctgtatccttccactacatatggtgatatacactaaatcttctcacatacacttccagGTTATTTTAGAATGCGTGGATAAGGGGGTTAGAGAAGGCAGGCATCAAGTTCATGCTTGGCTATCCCTCCTTGCAGCCCGGTATAATCAGGTCCTGAGTT
- - - - aacacta
- - - - - - - - - - - - - - - - - - - ggagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acactaa