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...aaaactgaggggcatatgaaattgtatgttctatgaatcaactggtcacttcaaacataccaagacgttaatttcgcagcatgttaatttgtaactgcagGCCAAGTCATATGATCCTGAAGGGGAATACGTTGCATACTGGTTACCAGAACTTCGGTCACTTGCAAAGGAAAGGAGAAATTTCCCAGGAGCCTCATACA
species | Zea mays |
transcript | GRMZM2G103897_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAGTTGGCAATGATCCACGAGAAGATCGATACTTCAGTATCCCAAAACAA GCCAAGTCATATGATCCTGAAGGGGAATACGTTGCATACTGGTTACCAGAAEST: gi|32909346|gb|CF014158.1|CF014158
genomic: GAGTTGGCAATGATCCACGAGAAGATCGATACTTCAGTATCCCAAAACAAgtaagtagtt ... gtaactgcagGCCAAGTCATATGATCCTGAAGGGGAATACGTTGCATACTGGTTACCAGAA
EST: AGTTGGCAATGATCCACGAGAAGATCGATACTTCAGGTATCCCAAAACAA GCCAAGTCATATGATCCTGAAGGGGAATACGTTGCATACTGGTTACCAGAAEST: gi|110957435|gb|EE177487.1|EE177487
genomic: AGTTGGCAATGATCCACGAGAAGATCGATACTTCAG-TATCCCAAAACAAgtaagtagtt ... gtaactgcagGCCAAGTCATATGATCCTGAAGGGGAATACGTTGCATACTGGTTACCAGAA
EST: GAGTTGGCAATGATCCACGAGAAGATCGATACTTCAGTATCCCAAAACAA GCCAAGTCATATGATCCTGAAGGGGAATACGTTGCATACTGGTTACCAGAAEST: gi|148999289|gb|EE036219.2|EE036219
genomic: GAGTTGGCAATGATCCACGAGAAGATCGATACTTCAGTATCCCAAAACAAgtaagtagtt ... gtaactgcagGCCAAGTCATATGATCCTGAAGGGGAATACGTTGCATACTGGTTACCAGAA
EST: GAGTTGGCAATGATCCACGAGAAGATCGATACTTCAGTATCCCAAAACAA GCCAAGTCATATGATCCTGAAGGGGAATACGTTGCATACTGGTTACCAGAAEST: gi|16379730|gb|BI993117.1|BI993117
genomic: GAGTTGGCAATGATCCACGAGAAGATCGATACTTCAGTATCCCAAAACAAgtaagtagtt ... gtaactgcagGCCAAGTCATATGATCCTGAAGGGGAATACGTTGCATACTGGTTACCAGAA
EST: AATGATCCCCGAGAAGATCGATACTTCAGTATCCCAAAACAA GCCAAGTCATATGATCCTGAAGGGGAATACGTTGCATACTGGTTACCAGAAEST: gi|13149731|gb|BG320053.1|BG320053
genomic: AATGATCCACGAGAAGATCGATACTTCAGTATCCCAAAACAAgtaagtagtt ... gtaactgcagGCCAAGTCATATGATCCTGAAGGGGAATACGTTGCATACTGGTTACCAGAA
EST: GAGTTGGCAATGATCCACGAGAAGATCGATACTTCAGTATCCCAAAACAA GCCAAGTCATATGATCCTGAAGGGGAATACKTTGCATACTGGTTACCAGAA
genomic: GAGTTGGCAATGATCCACGAGAAGATCGATACTTCAGTATCCCAAAACAAgtaagtagtt ... gtaactgcagGCCAAGTCATATGATCCTGAAGGGGAATACGTTGCATACTGGTTACCAGAA
tcacttcaaacataccaagacgttaatttcgcagcatgttaatttgtaactgcagGCCAAGTCATATGATCCTGAAGGGGAATACGTTGCATACTGGTTACCAGAACTTCGGTCACTTGCAAAGGAAAGGAGAAATTTCCCAGGAGCCTCATACA
ttgtaac putative branch site (score: 2)
atgttaatttgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaactgaggggcatatgaaattgtatgttctatgaatcaactggtcacttcaaacataccaagacgttaatttcgcagcatgttaatttgtaactgcagGCCAAGTCATATGATCCTGAAGGGGAATACGTTGCATACTGGTTACCAGAACTTCGGTCACTTGCAAAGGAAAGGAGAAATTTCCCAGGAGCCTCATACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA